Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L15
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +3

Query: 312 LVFYLRHQTGDVPCTISTSPRKYSSNHGRR*NCITDKAASTTKHQXCHQT 461
           L  + R  TG+ P T     + +  NH  + + +        K   CH+T
Sbjct: 219 LKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHET 268


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 262 VSKSLVIFERVRDFSLRLISY 200
           ++KSL   ++ RD SLR+I Y
Sbjct: 508 LNKSLKYSDKERDLSLRMILY 528


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +3

Query: 213 RREKSRTRSKITSDFETQSTDWLHD 287
           R  + R    ++ D+     DWLH+
Sbjct: 62  RDSRLRLPENMSEDYRILDVDWLHN 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,429
Number of Sequences: 438
Number of extensions: 3485
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)