Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L10
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 229 1e-61
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 229 1e-61
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 144 7e-36
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 144 7e-36
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 144 7e-36
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 91 1e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 44 2e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 1e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.1
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 6.3
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 25 8.4
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 8.4
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 229 bits (561), Expect = 1e-61
Identities = 107/119 (89%), Positives = 111/119 (93%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 215 STLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLXP 391
STLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN L P
Sbjct: 65 STLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 229 bits (561), Expect = 1e-61
Identities = 107/119 (89%), Positives = 111/119 (93%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 215 STLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLXP 391
STLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN L P
Sbjct: 65 STLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 144 bits (349), Expect = 7e-36
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 215 STLHLVLRLRGG 250
STLHLVLRLRGG
Sbjct: 65 STLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 144 bits (349), Expect = 7e-36
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 215 STLHLVLRLRGG 250
STLHLVLRLRGG
Sbjct: 65 STLHLVLRLRGG 76
Score = 144 bits (349), Expect = 7e-36
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 140
Query: 215 STLHLVLRLRGG 250
STLHLVLRLRGG
Sbjct: 141 STLHLVLRLRGG 152
Score = 144 bits (349), Expect = 7e-36
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 216
Query: 215 STLHLVLRLRGG 250
STLHLVLRLRGG
Sbjct: 217 STLHLVLRLRGG 228
Score = 144 bits (349), Expect = 7e-36
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 292
Query: 215 STLHLVLRLRGG 250
STLHLVLRLRGG
Sbjct: 293 STLHLVLRLRGG 304
Score = 144 bits (349), Expect = 7e-36
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 368
Query: 215 STLHLVLRLRGG 250
STLHLVLRLRGG
Sbjct: 369 STLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 144 bits (349), Expect = 7e-36
Identities = 69/72 (95%), Positives = 72/72 (100%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 215 STLHLVLRLRGG 250
STLHLVLRLRGG
Sbjct: 65 STLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 90.6 bits (215), Expect = 1e-19
Identities = 38/73 (52%), Positives = 55/73 (75%)
Frame = +2
Query: 35 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 214
VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++
Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGG 64
Query: 215 STLHLVLRLRGGT 253
S LHLVL LRGG+
Sbjct: 65 SVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 53 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 229
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 230 VLRLRGGTIEP 262
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = +2
Query: 17 TQCKYSVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 196
T ++K + + V++ ++ +K I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 197 YNIQKESTLHLVLRL 241
Y IQ ++HLV L
Sbjct: 62 YKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 50 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 223
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 2.1
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 TQCKYSVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 196
++ + V T+ K +V + T+ +K I P D+ +LI AG+ L + L +
Sbjct: 2 SEYRIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
Query: 197 --YNIQKESTLHLVLRLRGGT 253
++ T HLV+ + T
Sbjct: 62 ILHDATDLVTFHLVIAVFNST 82
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 6.3
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +2
Query: 38 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA------GKQLE-------D 178
K TGKT + + + ++ K+KIQ +P + L + GK +
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG 148
Query: 179 GRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRAT 346
G TL D I+ T+H+V+ G ++ + + +A C + + L P T
Sbjct: 149 GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFT 204
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 22 MQIFRQNPYGEDHYIG 69
+++ N YGE HYIG
Sbjct: 252 IEVLTWNDYGESHYIG 267
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 8.4
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +2
Query: 44 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 214
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 215 STLH 226
LH
Sbjct: 154 QVLH 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,142
Number of Sequences: 5004
Number of extensions: 41408
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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