Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L09
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    70   3e-13
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    44   3e-05
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.1  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   4.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.5  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    25   9.5  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 47/150 (31%), Positives = 69/150 (46%)
 Frame = +2

Query: 203 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 382
           L +E ++ LP  V+RRI  LR LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 383 NGTYEPNDDECLNPWRDDTEXXELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 562
            G  EP ++E         +  E A   +    T  E KK +         + KGIP+FW
Sbjct: 123 RGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168

Query: 563 YNIFRNVSMLSEMMQEHDEPILKCLQDIKV 652
               +NV  LSEM+   DE  L  L DI++
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVDIRI 198


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 533 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 649
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 467 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 553
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -3

Query: 541 YIGIH-WRLNSLVILLFLTLSDGSI---LYRPS*LXXFSVITPWVETFIIIRFIC 389
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 146  HLLKSGVTRNEMIAAITNRLHAEAMASLP 232
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 211 CMKAISDGRYHFITGHATFQ 152
           C+K +    + +ITGHA F+
Sbjct: 255 CLKFVRPSLFGYITGHAVFE 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,427
Number of Sequences: 5004
Number of extensions: 44886
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)