Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L08
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 220 7e-58
07_01_0756 + 5819367-5820038,5820847-5821005 217 6e-57
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 49 4e-06
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.2
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 29 3.2
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 29 4.3
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 5.6
11_01_0395 + 2999855-2999920,3000605-3002191 28 7.5
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 28 7.5
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 9.9
08_01_0312 + 2764744-2767390,2767632-2767990 27 9.9
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 27 9.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 220 bits (538), Expect = 7e-58
Identities = 98/131 (74%), Positives = 118/131 (90%)
Frame = +1
Query: 178 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 357
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 358 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNK 537
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVR GYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 538 IGKPHTVPCKV 570
IG+PHTVPCKV
Sbjct: 157 IGQPHTVPCKV 167
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +2
Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
+ TGKCGSVTVR++PAPRG+GIV+A VPK
Sbjct: 166 KVTGKCGSVTVRMVPAPRGSGIVAARVPK 194
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 217 bits (530), Expect = 6e-57
Identities = 98/131 (74%), Positives = 117/131 (89%)
Frame = +1
Query: 178 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 357
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 358 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNK 537
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVR GYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 538 IGKPHTVPCKV 570
IGKPHTVPCKV
Sbjct: 160 IGKPHTVPCKV 170
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = +2
Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
+ TGKCGSVTVR++PAPRG+GIV+A VPK
Sbjct: 169 KVTGKCGSVTVRMVPAPRGSGIVAAHVPK 197
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 397 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKIG-KPHTVPCKV 570
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKV 55
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 485 SLLSCLFYQFEXVTGVTRSES-HTPSLARFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
+++ +F E T T S HT S + K GSVTVR++ P G+ +V+ VPK
Sbjct: 27 AIILAMFRCAEGATRETISRKPHTVS-CKVADKYGSVTVRMMLPPMGSSVVATRVPK 82
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 325 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 504
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 505 LPV 513
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 459 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 343
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 576 PVNLARDGVWLSDLVTPVTXSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 421
P +L D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 352 PDDLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +2
Query: 395 HLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEXVTGVTRSESHTPSLARFT 574
+L+ +A ++ +W A RK PF L ++ GVT + +P +
Sbjct: 107 NLIAVAVGKLVQIWRSPAFRKEFFPFHLLRTIPG-------FAAGVTAFD-WSPDSSFLL 158
Query: 575 GKCGSVTVRLIPAPRGTG 628
C +T RL+P +G G
Sbjct: 159 ASCKDLTARLLPVKKGLG 176
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 561 RDGVWLSDLVTPVTXSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 403
R VW++D TPVT S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 265 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 384
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -2
Query: 163 HGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL**TSQATKIL 2
+GR H D RG+ L+ +++ R + V++ E P L GL ++ T +L
Sbjct: 48 YGRIHFPGDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLML 101
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 181 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 315
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +2
Query: 377 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 502
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 630 IPVPRGAGISRTVTEPHLPVNLARDGVWLSDLVTPVTXSNW*NRQ-LSKDNSASNG 466
+P P+ A S TV H P L+R +P S+W Q S+ NS NG
Sbjct: 64 LPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSP---SSWAQAQPFSRSNSMGNG 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,456
Number of Sequences: 37544
Number of extensions: 392450
Number of successful extensions: 1193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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