Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L08
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   258   6e-69
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   258   6e-69
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   258   6e-69
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   258   6e-69
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   258   6e-69
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    31   1.8  
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    31   1.8  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  258 bits (631), Expect = 6e-69
 Identities = 122/131 (93%), Positives = 124/131 (94%)
 Frame = +1

Query: 178 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 357
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 358 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNK 537
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 538 IGKPHTVPCKV 570
           IGKPHTVPCKV
Sbjct: 157 IGKPHTVPCKV 167



 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +2

Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
           + TGKCGSV+VRLIPAPRGTGIVSAPVP+
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPR 194


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  258 bits (631), Expect = 6e-69
 Identities = 122/131 (93%), Positives = 124/131 (94%)
 Frame = +1

Query: 178 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 357
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 358 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNK 537
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 538 IGKPHTVPCKV 570
           IGKPHTVPCKV
Sbjct: 157 IGKPHTVPCKV 167



 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +2

Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
           + TGKCGSV+VRLIPAPRGTGIVSAPVPK
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPK 194


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  258 bits (631), Expect = 6e-69
 Identities = 122/131 (93%), Positives = 124/131 (94%)
 Frame = +1

Query: 178 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 357
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 358 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNK 537
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 538 IGKPHTVPCKV 570
           IGKPHTVPCKV
Sbjct: 157 IGKPHTVPCKV 167



 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +2

Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
           + TGKCGSV+VRLIPAPRGTGIVSAPVPK
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPK 194


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  258 bits (631), Expect = 6e-69
 Identities = 122/131 (93%), Positives = 124/131 (94%)
 Frame = +1

Query: 178 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 357
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 358 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNK 537
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 538 IGKPHTVPCKV 570
           IGKPHTVPCKV
Sbjct: 157 IGKPHTVPCKV 167



 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +2

Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
           + TGKCGSV+VRLIPAPRGTGIVSAPVPK
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPK 194


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  258 bits (631), Expect = 6e-69
 Identities = 122/131 (93%), Positives = 124/131 (94%)
 Frame = +1

Query: 178 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 357
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 358 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNK 537
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR GYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 538 IGKPHTVPCKV 570
           IGKPHTVPCKV
Sbjct: 157 IGKPHTVPCKV 167



 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +2

Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
           + TGKCGSV+VRLIPAPRGTGIVSAPVPK
Sbjct: 166 KVTGKCGSVSVRLIPAPRGTGIVSAPVPK 194


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 184 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 41
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 184 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 41
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,868,761
Number of Sequences: 53049
Number of extensions: 652490
Number of successful extensions: 2936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)