Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L08
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   210   5e-55
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    30   1.2  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   5.0  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   5.0  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  210 bits (514), Expect = 5e-55
 Identities = 103/130 (79%), Positives = 111/130 (85%)
 Frame = +1

Query: 181 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 360
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110

Query: 361 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRXGYWGNKI 540
           QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVR GYWGNKI
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKI 170

Query: 541 GKPHTVPCKV 570
           G PHTVPCKV
Sbjct: 171 GLPHTVPCKV 180



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +2

Query: 566 RFTGKCGSVTVRLIPAPRGTGIVSAPVPK 652
           + TGKC SV VRLIPAPRGTGIVSAPVPK
Sbjct: 179 KVTGKCASVMVRLIPAPRGTGIVSAPVPK 207


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 386 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 210
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 209 VTGT 198
            + T
Sbjct: 582 QSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 386 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 210
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 209 VTGT 198
            + T
Sbjct: 582 QSNT 585


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 336 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 479
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 336 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 479
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,304
Number of Sequences: 27780
Number of extensions: 316118
Number of successful extensions: 896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)