Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L07
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    61   8e-11
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    33   0.033
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    32   0.044
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   3.8  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   3.8  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   5.1  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   6.7  

>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 61.3 bits (142), Expect = 8e-11
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +3

Query: 159 LLQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEF 317
           L  Y+ L++ CF+DC+ DFTS  L + E +C   C +K+L+ ++RV QRF EF
Sbjct: 25  LNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFAEF 77


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 32.7 bits (71), Expect = 0.033
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 171 NKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 308
           +K++E CF+ CI +  S T    E  C   CME+Y+     VS+ +
Sbjct: 39  SKINENCFDKCIPEPGS-TFDPNEKSCVSKCMERYMDAWNIVSRTY 83


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 147 QGISLLQ-YNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRF 308
           Q + L Q  ++ +  C+  CI +  ++  KS E++C  NC+E++L  N  + +R+
Sbjct: 29  QKVKLQQAIHQFTSTCWPKCIGNIGNKLDKS-EEQCLQNCVERFLDCNFHIIKRY 82


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 49  NTKQSHCSKLFLKIYRNGDPLQ 114
           NT  +HC+KLF  I R+ D L+
Sbjct: 3   NTLYNHCTKLFQSIQRSLDELE 24


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 171 NKLSELCFNDCIHDFTSRTLKSTEDKCTV 257
           NK++ LCF D I D +  ++K T  KC +
Sbjct: 81  NKIASLCFEDVI-DTSHVSIKLTLPKCVL 108


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 285 NQRVSQRFHEFQMLANENMLALAQ 356
           N RVS+R HEFQ    + + +L Q
Sbjct: 189 NLRVSKRVHEFQEFFGDGITSLTQ 212


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 312 EFQMLANENMLALAQKSGNPX*KVWYICDLSSHFL*GVXXXXTPYIMIYLCKCTV 476
           EF  LA+  +  L Q   +P    +Y    S  FL         YI+I LCKC +
Sbjct: 687 EFYDLASREITLLQQSDNHPNIVRYYCKQKSDQFL---------YIVIELCKCNL 732


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 506 QNFIDNNLDIHCTFAQVYHYIG 441
           Q F+++    +CTF Q+Y+ IG
Sbjct: 191 QEFVESCHGQYCTFQQIYNNIG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,470
Number of Sequences: 5004
Number of extensions: 35034
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)