Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L07
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)          36   0.026
SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)               30   1.3  
SB_48729| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_51398| Best HMM Match : zf-Tim10_DDP (HMM E-Value=2.7e-28)
          Length = 143

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 162 LQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHE 314
           +Q +K ++ C++ C+ D     L    + C VNC+E+++     +++RF E
Sbjct: 85  MQVHKFTDTCWDKCM-DKPGNKLDGKTETCLVNCVERFIDTTLLITKRFGE 134


>SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)
          Length = 337

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 159 LLQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEFQMLANEN 338
           L + NKL E+ FND   +  S +L+ T ++     M ++    +++ QRF + ++   EN
Sbjct: 103 LFRRNKLEEMGFNDGDANNKSHSLQETYEERRKEYMSQFQDKEEKMRQRFVQ-KVKDKEN 161

Query: 339 MLALAQK 359
            L  A++
Sbjct: 162 ELKKAEQ 168



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 159 LLQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHEFQMLANEN 338
           L + NKL E+ FND   +  S +L+ T ++     M ++    +++ QRF + ++   EN
Sbjct: 208 LFRRNKLEEMGFNDGDANNKSHSLQETYEERRKEYMSQFQDKEEKMRQRFVQ-KVKDKEN 266

Query: 339 MLALAQK 359
            L  A++
Sbjct: 267 ELKKAEQ 273


>SB_48729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 32

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 LLQYNKLSELCFNDCIHDFTSRTLKSTE 242
           L+ YN+L+E CF+ C  +   R+L   E
Sbjct: 5   LMLYNRLTETCFHTCATNLNYRSLTQEE 32


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 55  KQSHCSKLFLKIYRNGDPLQMMSEVDQIKTFKAFPCYNTTSCLNFVSM 198
           K+S CSK    +YR   PL+       +K   A P Y        V+M
Sbjct: 27  KKSLCSKARRGVYRKFGPLKWKKRTTPLKILAAGPAYKAYDFYRHVNM 74


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 CMEKYLRMNQRVSQRFHEFQMLANENMLALAQKSGNP 371
           C+E YL   + V  RF+    L+NE++L +   + NP
Sbjct: 776 CLEDYLETKRLVFSRFY---FLSNEDLLDILANNKNP 809


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,058
Number of Sequences: 59808
Number of extensions: 240317
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)