Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L06
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    82   3e-17
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   2.8  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   3.8  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     25   3.8  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 44/107 (41%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
 Frame = +2

Query: 35  MVHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFX 208
           MV++PK R+TY              +QYKK                 S  +GGQ+KP+F 
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQS-GFGGQTKPVFH 59

Query: 209 XXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKGQMIQF 349
                   +VLRLEC  CK ++Q+ LKRCKHFELGG+K  KG  IQF
Sbjct: 60  KKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 132 AFALDFLYCDTLCTLWHL 79
           A  L +LY DTL + WHL
Sbjct: 683 AILLHYLYTDTLLSPWHL 700


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 39  CTYQNSAGRTAKNVNATKYTRYHSTKSPRQRHAA 140
           CT+   A R +++   T++ R H+  + R+  AA
Sbjct: 56  CTFPGCAKRFSRSDELTRHARIHTNANSRRNAAA 89


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 183 P*ALLFTIITSSSXGQRAFALDFL 112
           P A+ FT+ TS S G + FAL F+
Sbjct: 8   PGAIEFTVHTSKSYGTQMFALCFI 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,917
Number of Sequences: 5004
Number of extensions: 23562
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)