Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L06
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 75 3e-14
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 75 3e-14
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 75 3e-14
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 73 1e-13
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 73 1e-13
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 73 1e-13
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 73 1e-13
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 51 5e-07
02_01_0043 + 300122-300907,301447-301722,302347-302481 28 2.8
03_01_0179 - 1443508-1443624,1443712-1443773,1444904-1444971,144... 28 3.7
11_06_0669 - 26084906-26087350 27 8.6
06_03_0885 + 25677243-25678157,25681064-25681705 27 8.6
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 74.5 bits (175), Expect = 3e-14
Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +2
Query: 35 MVHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFX 208
MV+VPK ++TY +QYKK K S YGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQS-GYGGQTKPVFH 59
Query: 209 XXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHFE+GGDK KG
Sbjct: 60 KKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 74.5 bits (175), Expect = 3e-14
Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +2
Query: 35 MVHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFX 208
MV+VPK ++TY +QYKK K S YGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQS-GYGGQTKPVFH 59
Query: 209 XXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHFE+GGDK KG
Sbjct: 60 KKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 74.5 bits (175), Expect = 3e-14
Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +2
Query: 35 MVHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFX 208
MV+VPK ++TY +QYKK K S YGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQS-GYGGQTKPVFH 59
Query: 209 XXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHFE+GGDK KG
Sbjct: 60 KKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 72.5 bits (170), Expect = 1e-13
Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +2
Query: 38 VHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFXX 211
V+VPK ++TY +QYKK K S YGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQS-GYGGQTKPVFHK 88
Query: 212 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHFE+GGDK KG
Sbjct: 89 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 72.5 bits (170), Expect = 1e-13
Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +2
Query: 38 VHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFXX 211
V+VPK ++TY +QYKK K S YGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQS-GYGGQTKPVFHK 88
Query: 212 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHFE+GGDK KG
Sbjct: 89 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 72.5 bits (170), Expect = 1e-13
Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +2
Query: 38 VHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFXX 211
V+VPK ++TY +QYKK K S YGGQ+KP+F
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQS-GYGGQTKPVFHK 87
Query: 212 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHFE+GGDK KG
Sbjct: 88 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 128
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 72.5 bits (170), Expect = 1e-13
Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +2
Query: 38 VHVPKQRRTYXXXXXXXXXXXX--SQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPIFXX 211
V+VPK ++TY +QYKK K S YGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQS-GYGGQTKPVFHK 88
Query: 212 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHFE+GGDK KG
Sbjct: 89 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +2
Query: 233 IVLRLECADCKVRSQVALKRCKHFELGGDKXRKG 334
IVL+L+C CK SQ +KRCKHF++GGDK KG
Sbjct: 25 IVLKLQCQSCKHYSQHPIKRCKHFKIGGDKKGKG 58
>02_01_0043 + 300122-300907,301447-301722,302347-302481
Length = 398
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 336 CPFLFLSPPSSKCLHLFNATCDLTLQSAHSRRSTIXLVVF 217
CP F SPPSS C F ++ DL H + L +F
Sbjct: 45 CPLGFTSPPSSSCPLGFTSSYDLDAAFHHHLDLDLDLDLF 84
>03_01_0179 -
1443508-1443624,1443712-1443773,1444904-1444971,
1445811-1445868,1446439-1446629,1447164-1447359,
1448396-1448609
Length = 301
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -1
Query: 135 RAFALDFLYCDTLCTLWHLHFLQY---VLRCFGTCTIFEC 25
R +D LY D ++ L L+Y +L C TCT EC
Sbjct: 69 RTKVIDNLYVDRKTSVMILSILKYTGPILECVFTCTFDEC 108
>11_06_0669 - 26084906-26087350
Length = 814
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 105 DTLCTLW--HLHFLQYVLRCFGTCTIF 31
+T+ LW + H Q V RCF C+IF
Sbjct: 307 ETMGALWWSYQHLDQQVRRCFAYCSIF 333
>06_03_0885 + 25677243-25678157,25681064-25681705
Length = 518
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 130 GTLPXARRRYDRKQQGLRWSVQTHLQKEGKN 222
GT+ A++ +D L ++Q HLQK G +
Sbjct: 237 GTIRQAKKCWDTMSSVLESTIQEHLQKNGSS 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,451,953
Number of Sequences: 37544
Number of extensions: 165972
Number of successful extensions: 447
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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