Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L06
(432 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 95 2e-20
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 60 8e-10
SB_20887| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16) 30 0.93
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 29 2.2
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_34515| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14) 28 3.8
SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2) 27 5.0
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 5.0
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 27 8.7
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 95.1 bits (226), Expect = 2e-20
Identities = 51/109 (46%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Frame = +2
Query: 29 SKMVHVPKQRRTYXXXXX--XXXXXXXSQYKKSKAKARCPXLEDVMIVNSRAYGGQSKPI 202
S +V+VPKQR+T+ +QYK KA S +GGQ+KP+
Sbjct: 6 SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQS-GFGGQTKPV 64
Query: 203 FXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKGQMIQF 349
F IVLR+EC CK R Q+ LKRCKHFELGGDK RKGQMIQF
Sbjct: 65 FHKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 60.1 bits (139), Expect = 8e-10
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +2
Query: 233 IVLRLECADCKVRSQVALKRCKHFELGGDKXRK 331
IVLR+EC CK R Q+ LKRCKHFELGGDK RK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_20887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 29.9 bits (64), Expect = 0.93
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 88 QSTQGITVQKVQGKGTLPXARRRYDRKQQGLRW 186
++ +G +++K+ G+ + AR+ R Q+G RW
Sbjct: 363 ENAEGNSIKKIDGRKNVSTARKSVKRHQKGERW 395
>SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)
Length = 986
Score = 29.9 bits (64), Expect = 0.93
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 112 QKVQGKGTLPXARRRYDRKQQGLRWSV 192
Q +G G P YDRK +G RW+V
Sbjct: 564 QTCRGDGGSPFISESYDRKSRGYRWAV 590
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 146 LEDVMIVNSRAYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELG 313
L+D +I NS++ +SK + I L C C V +A KRC+ +G
Sbjct: 105 LDDSLIKNSQSE--ESKVFYNKIVLPTSNITTALNCKTCNVVYLIACKRCQKQYVG 158
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 245 LECADCKVRSQVALKRCKHFELG 313
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_34515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 27 TQKWCTYQNSAGRTAKNVNATKYTRYHSTKSPRQRHAA 140
T KWCT Q+ A + V++T + P ++H A
Sbjct: 50 TSKWCTVQDVASTPYRIVHSTPLADKLPSTQPSKKHGA 87
>SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)
Length = 904
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 152 LLALGSVPLPWT---FCTVIPCVLCGIYIFCS 66
L A+G +P P T + I C LCG+++F +
Sbjct: 362 LTAIGDLPSPATNFEYLYTIACYLCGVFMFAT 393
>SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2)
Length = 327
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 88 QSTQGITVQKVQGKGTLPXARRRYDRKQQGLRW 186
++ +G +QK+ G+ L AR+ R Q+ RW
Sbjct: 262 ENAKGHPIQKIDGRKNLSTARKSGKRHQKDGRW 294
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 362 LEAFKIGSSVPFXSCHHQAQSACI 291
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 342 IICPFLFLSPPSSKCLHLFNATCDLTLQSAHSR 244
I+C F +P +KCLH F C L +S+
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKKNSK 278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,049,495
Number of Sequences: 59808
Number of extensions: 196828
Number of successful extensions: 553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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