Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L05
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 264 8e-72
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 262 3e-71
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 43 3e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.59
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.1
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 4.1
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 25 7.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.5
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 9.5
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 264 bits (647), Expect = 8e-72
Identities = 125/192 (65%), Positives = 150/192 (78%)
Frame = +3
Query: 78 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 257
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 258 XIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 437
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 438 PAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 617
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 618 GVLPRDQRWDVV 653
G + R W+V+
Sbjct: 190 GNISRTTAWEVM 201
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 262 bits (642), Expect = 3e-71
Identities = 121/192 (63%), Positives = 150/192 (78%)
Frame = +3
Query: 78 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 257
+L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAAR +
Sbjct: 9 ILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIA 68
Query: 258 XIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 437
IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V D
Sbjct: 69 TIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTD 128
Query: 438 PAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 617
P D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188
Query: 618 GVLPRDQRWDVV 653
G L R WDV+
Sbjct: 189 GTLSRSAPWDVM 200
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 43.2 bits (97), Expect = 3e-05
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 27/190 (14%)
Frame = +3
Query: 111 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVXIENPADVF 284
+L++ HLG N + ++Y +R +G H+I+L +T L A V I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 285 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 401
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 402 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHS 569
++ P L+++L+P ++ EA ++P I + +TD+ V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 570 IGLMWWLLAR 599
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 201 VINLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 377
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 464 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP**DD 285
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 284 EHISGVLDG 258
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 570 IGLMWWLLAREVLRLRGVLPRDQRWD 647
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.1
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 336 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 500
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 501 CNTDSPLXFVDIAIPCNTKSSHSI 572
C+ +S F D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 574 PIEWEDLVLHGIAMSTNXSGESVLHKAITGMLTYEASVMG 455
PIE+E++ + G+ + SG++ LH+AI + + + G
Sbjct: 49 PIEFEEIDVTGMEKNNKSSGDA-LHEAIQSLKRNKVGLKG 87
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +1
Query: 169 MSTNDVLMVPM*STCVVPGKNLFWLLVLSXPSRTPLMCSSSHH 297
M+ N V + + T PG N FW L++ M H+
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLIIRVSESAFKMHKDGHN 962
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 209 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 60
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 271 GFSMXTTARAARTSFSQVRRKLITWVPSAR 182
G+++ ++ AA+ SFS +K I W S R
Sbjct: 209 GYTISSSVIAAKLSFSVRAKKKIKWATSRR 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,113
Number of Sequences: 5004
Number of extensions: 66288
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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