Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L05
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 258 3e-69
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 255 3e-68
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 3.2
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 4.3
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 5.6
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 28 7.5
04_04_0907 + 29304830-29305030,29305296-29305547 28 7.5
05_07_0129 - 27886738-27886767,27887043-27887312,27888407-278884... 27 9.9
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 9.9
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 27 9.9
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 9.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 258 bits (632), Expect = 3e-69
Identities = 119/202 (58%), Positives = 150/202 (74%)
Frame = +3
Query: 48 ISATMSGGLXVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 227
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 228 KLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 407
KL LAAR +V IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 408 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWW 587
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+ +VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 588 LLAREVLRLRGVLPRDQRWDVV 653
LLAR VL++RG + +WDV+
Sbjct: 181 LLARMVLQMRGTILPGHKWDVM 202
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 255 bits (624), Expect = 3e-68
Identities = 119/198 (60%), Positives = 147/198 (74%), Gaps = 2/198 (1%)
Frame = +3
Query: 66 GGLXVLALN--EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 239
GG AL+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL L
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
Query: 240 AARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 419
AAR +V IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPR
Sbjct: 65 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124
Query: 420 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWWLLAR 599
LLI+ DP DHQPI E++ NIP IA C+TDSP+ +VDI IP N K SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184
Query: 600 EVLRLRGVLPRDQRWDVV 653
VL++RG + +WDV+
Sbjct: 185 MVLQMRGTILPGHKWDVM 202
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/82 (29%), Positives = 30/82 (36%)
Frame = +2
Query: 89 QRGRCHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXHRE 268
+RG CH C P GR+ P G + CD A+ G TC C H+
Sbjct: 321 ERG-CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKC 374
Query: 269 PR*CVRHLITALRSACCTEVCR 334
P C R T+ CR
Sbjct: 375 PERCHRGSCVETCRLVITKSCR 396
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 290 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 382
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 155 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXH 262
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 145 FSAPRWVVAASILVTSSSLRASTXNPPDIVALI*VTTK 32
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 438 PAQDHQPITE-ASYVNIPVIALCNTDSPLXFVDIAIPCNT 554
P D + E A+ NIP+I L + D P +IA C T
Sbjct: 23 PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
>05_07_0129 -
27886738-27886767,27887043-27887312,27888407-27888482,
27889148-27889962
Length = 396
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 568 EWEDLVLHGIAMSTNXSGESVLHKAITG 485
EW++L+L G A+++ SGE L A G
Sbjct: 72 EWDELLLSGAALASESSGELQLVAASPG 99
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 593 QQPPHQTNRVGRLGVAWDSNVHKX*WGVCVAQS 495
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 583 HIKPIEWEDLVLHGIAMSTNXSGESVLHKAITGMLTYEASV 461
H+ + L LH A S N ES LH+A+ EA V
Sbjct: 1337 HLTEVHTRSLELHSAAESKNEEIESKLHEALEMAAQKEAEV 1377
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 191 WYPCDQLASYLGKTCSGCSCCRXHREP 271
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,349,983
Number of Sequences: 37544
Number of extensions: 502822
Number of successful extensions: 1202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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