Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L02
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    49   7e-07
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.3  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    27   3.0  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   4.0  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   4.0  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   9.2  

>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = +3

Query: 105 KLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCE--VKAKMWILNLGKPV 278
           K+  LLV+ +SKPIAN  K +AK +  FR   C+  AQ+ +  E  +       + G  V
Sbjct: 7   KIGSLLVRTLSKPIANTIKAQAKEHKAFRK-ACIEFAQWMHRAEFRITGINRAKSGGANV 65

Query: 279 NIPVLSQEMAIELGANLLGETVIFVIGASLLVIE 380
            +  L+   A++ GA  L ET IF +    ++ E
Sbjct: 66  RLRPLNDAKAVDAGATFLSETFIFTVAGGAILFE 99


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -1

Query: 382  YSITKRLAPITNITVSPRRFAPSSMAISWLKTGILTGFPKFKIHILALTSHQL 224
            Y+  ++L+  T+I   PR        +SWLK  +++ F  F I  + LT H+L
Sbjct: 1390 YNGNQKLSYDTSIV--PRGCYQLGPVLSWLKRCVISIFIVFWISFIPLTVHEL 1440


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 60  LNNPYNMVVGA-FPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCE 236
           LNN    +  A F   K   L ++   KP++   +   KNN   +TYV    +    + +
Sbjct: 219 LNNSSQYINDACFNYGKFLGLSLQLAHKPVSPDAQVLQKNNDILKTYVENAKSSLSVFPD 278

Query: 237 VKAKMWILNLGKPVN 281
           ++AK  ++ +   V+
Sbjct: 279 IEAKQALMEIANSVS 293


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 454 LSQICILLCK--NNRHNSXKWKGLFI 525
           L+++C LL +  +NRH   +W+ LF+
Sbjct: 275 LNELCALLSRRFSNRHTFSEWRALFM 300


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 209 RHTNISSEKWIILGSLLAHVRDWFTYLFHQQN 114
           RH N    +W  L  L A   D FTY + +QN
Sbjct: 271 RHLNCQKLEWRALDELDAGTCDGFTYDYIEQN 302


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 KNNPFFRTYVCMPPAQFYNWCEVKAK 248
           KNNPF  +    PP Q +N+ ++  K
Sbjct: 3   KNNPFVHSNANFPPLQTHNFEDIPEK 28


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 36  FWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKP 143
           F++ L   + NPY M+   FPI  +   L   I  P
Sbjct: 334 FYLSLNCLIENPYRMLRNTFPIWFIMQTLQIYIQSP 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,615
Number of Sequences: 5004
Number of extensions: 55910
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)