Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L02
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                       111   5e-25
SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)                       29   2.4  
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_44478| Best HMM Match : Na_H_Exchanger (HMM E-Value=0)              28   5.6  
SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.6  
SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)              28   7.4  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score =  111 bits (267), Expect = 5e-25
 Identities = 55/132 (41%), Positives = 77/132 (58%)
 Frame = +3

Query: 72  YNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKM 251
           + MV GAFP+ KL  L VKQ+SKPIAN  K  AK +PFFR YVC+ P Q ++W E   KM
Sbjct: 112 FKMVAGAFPLFKLMTLGVKQVSKPIANAIKSGAKQSPFFRKYVCVLPGQGFHWLETTVKM 171

Query: 252 WILNLGKPVNIPVLSQEMAIELGANLLGETVIFVIGASLLVIEYNRQSXXXXXXXXXXXX 431
            +L    P +I  L++++A+EL A +LGE  IF +G + L+ EY R +            
Sbjct: 172 KLLGHVGPSHIKPLNEQVAVELTAEMLGEGFIFGVGVATLLFEYRRSAKKEEQKEAAQNS 231

Query: 432 XXXHITSTITDL 467
               + S ++DL
Sbjct: 232 KILALQSQVSDL 243


>SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)
          Length = 366

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 515 PFHXSELCLLFLHSKIQIC 459
           P H  ELCLL+ HS + IC
Sbjct: 74  PNHCQELCLLYCHSSVFIC 92


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 445 SQVLSQICILLCKNNRHNSXKWKGLFILLVEIKHPKTAHP 564
           S ++  I IL C ++RH+S +      ++  I HP   HP
Sbjct: 453 SFIIVSITILHCHHHRHSSSQSPSCNAIITVIHHPHHHHP 492


>SB_44478| Best HMM Match : Na_H_Exchanger (HMM E-Value=0)
          Length = 557

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 150 NVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKMWILNLG 269
           N  + RA  NP    YV +PP  FY    ++ + +  NLG
Sbjct: 168 NEIESRATFNPEIFFYVLLPPIIFYAGYSMQKRYFFRNLG 207


>SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 69  PYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNNPF 185
           P  + +G F +A+   +L    S P+A++ +  + +NPF
Sbjct: 364 PLQVKIGDFGLARKDAVLYPDTSSPLASLIEPLSHHNPF 402


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 522 HSIGGDQAPKNSPSSDKDSTNGXSPPXATLNNHVP 626
           H++  D  P   PS  K  T G S    + N H P
Sbjct: 847 HAVDEDGKPSTPPSRSKKRTRGISGDSVSDNRHTP 881


>SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)
          Length = 169

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 69  PYNMVV-GAFPIAKLSVLLVKQISKPIANVCKERAKNNPFF 188
           PYN+ V G   + +L+++  +     +  +C +R   NPFF
Sbjct: 4   PYNVRVRGKGRVLRLALMAQEHFKLQVLGICPKRNAENPFF 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,837,498
Number of Sequences: 59808
Number of extensions: 386685
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)