Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L02
(640 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005059-1|AAH05059.1| 179|Homo sapiens optic atrophy 3 (autoso... 119 1e-26
AK025840-1|BAB15255.1| 179|Homo sapiens protein ( Homo sapiens ... 119 1e-26
AK098798-1|BAC05415.1| 180|Homo sapiens protein ( Homo sapiens ... 113 7e-25
BC064146-1|AAH64146.1| 180|Homo sapiens optic atrophy 3 (autoso... 112 9e-25
BC047316-1|AAH47316.1| 180|Homo sapiens optic atrophy 3 (autoso... 112 9e-25
U22178-1|AAA83556.1| 77|Homo sapiens PSP57 protein. 30 6.0
AL450342-2|CAI14475.1| 77|Homo sapiens microseminoprotein, bet... 30 6.0
Z83840-2|CAB46206.1| 609|Homo sapiens X-ray repair complementin... 30 8.0
S38729-1|AAB22381.1| 609|Homo sapiens Ku autoantigen p70 subuni... 30 8.0
M32865-1|AAA36155.1| 609|Homo sapiens protein ( Human Ku protei... 30 8.0
J04611-1|AAA51733.1| 609|Homo sapiens G22P1 protein. 30 8.0
J04607-1|AAA61177.1| 609|Homo sapiens G22P1 protein. 30 8.0
CR542219-1|CAG47015.1| 609|Homo sapiens G22P1 protein. 30 8.0
BC072449-1|AAH72449.1| 609|Homo sapiens X-ray repair complement... 30 8.0
BC018259-1|AAH18259.1| 609|Homo sapiens X-ray repair complement... 30 8.0
BC012154-1|AAH12154.1| 609|Homo sapiens X-ray repair complement... 30 8.0
BC010034-1|AAH10034.1| 609|Homo sapiens X-ray repair complement... 30 8.0
BC008343-1|AAH08343.1| 609|Homo sapiens XRCC6 protein protein. 30 8.0
AY870329-1|AAW34364.1| 609|Homo sapiens thyroid autoantigen 70k... 30 8.0
>BC005059-1|AAH05059.1| 179|Homo sapiens optic atrophy 3 (autosomal
recessive, with chorea and spastic paraplegia) protein.
Length = 179
Score = 119 bits (286), Expect = 1e-26
Identities = 56/104 (53%), Positives = 75/104 (72%)
Frame = +3
Query: 78 MVVGAFPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKMWI 257
MVVGAFP+AKL L ++Q+SKP+AN KE A+ + FF+TY+C+PPAQ Y+W E++ KM I
Sbjct: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI 60
Query: 258 LNLGKPVNIPVLSQEMAIELGANLLGETVIFVIGASLLVIEYNR 389
+ V I L++E A ELGA LLGE IF++G LV+EY R
Sbjct: 61 MGFRGTV-IKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWR 103
>AK025840-1|BAB15255.1| 179|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22187 fis, clone HRC01029. ).
Length = 179
Score = 119 bits (286), Expect = 1e-26
Identities = 56/104 (53%), Positives = 75/104 (72%)
Frame = +3
Query: 78 MVVGAFPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKMWI 257
MVVGAFP+AKL L ++Q+SKP+AN KE A+ + FF+TY+C+PPAQ Y+W E++ KM I
Sbjct: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRI 60
Query: 258 LNLGKPVNIPVLSQEMAIELGANLLGETVIFVIGASLLVIEYNR 389
+ V I L++E A ELGA LLGE IF++G LV+EY R
Sbjct: 61 MGFRGTV-IKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWR 103
>AK098798-1|BAC05415.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ25932 fis, clone CBR05617. ).
Length = 180
Score = 113 bits (271), Expect = 7e-25
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Frame = +3
Query: 78 MVVGAFPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKMWI 257
MVVGAFP+AKL L ++Q+SKP+AN KE A+ + FF+TY+C+PPAQ Y+W E++ KM I
Sbjct: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWLEMRTKMRI 60
Query: 258 LNLGKPVNIPVLSQEMAIELGANLLGETVIFVIGASLLVIEY-------NRQSXXXXXXX 416
+ I L++ A ELGA LLGE +IF+ S L++EY R+
Sbjct: 61 MGFNAAA-IKPLNEGAAAELGAELLGEGIIFITACSCLMLEYWRHQLQQRRKEKERRVAR 119
Query: 417 XXXXXXXXHITSTITDLYFTVQKQQTQLRXME 512
H+ + +L VQ TQL E
Sbjct: 120 EALRGEVGHLELALEELQAQVQATSTQLALEE 151
>BC064146-1|AAH64146.1| 180|Homo sapiens optic atrophy 3 (autosomal
recessive, with chorea and spastic paraplegia) protein.
Length = 180
Score = 112 bits (270), Expect = 9e-25
Identities = 53/104 (50%), Positives = 73/104 (70%)
Frame = +3
Query: 78 MVVGAFPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKMWI 257
MVVGAFP+AKL L ++Q+SKP+AN KE A+ + FF+TY+C+PPAQ Y+W E++ KM I
Sbjct: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWLEMRTKMRI 60
Query: 258 LNLGKPVNIPVLSQEMAIELGANLLGETVIFVIGASLLVIEYNR 389
+ I L++ A ELGA LLGE +IF+ S L++EY R
Sbjct: 61 MGFNAAA-IKPLNEGAAAELGAELLGEGIIFITACSCLMLEYWR 103
>BC047316-1|AAH47316.1| 180|Homo sapiens optic atrophy 3 (autosomal
recessive, with chorea and spastic paraplegia) protein.
Length = 180
Score = 112 bits (270), Expect = 9e-25
Identities = 53/104 (50%), Positives = 73/104 (70%)
Frame = +3
Query: 78 MVVGAFPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKMWI 257
MVVGAFP+AKL L ++Q+SKP+AN KE A+ + FF+TY+C+PPAQ Y+W E++ KM I
Sbjct: 1 MVVGAFPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWLEMRTKMRI 60
Query: 258 LNLGKPVNIPVLSQEMAIELGANLLGETVIFVIGASLLVIEYNR 389
+ I L++ A ELGA LLGE +IF+ S L++EY R
Sbjct: 61 MGFNAAA-IKPLNEGAAAELGAELLGEGIIFITACSCLMLEYWR 103
>U22178-1|AAA83556.1| 77|Homo sapiens PSP57 protein.
Length = 77
Score = 30.3 bits (65), Expect = 6.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 482 KTTDTTPXNGKAYSFYWWRSSTQKQPIL 565
KTT + S WWR TQK+P+L
Sbjct: 46 KTTAKESSRRRTASISWWRRRTQKRPVL 73
>AL450342-2|CAI14475.1| 77|Homo sapiens microseminoprotein, beta-
protein.
Length = 77
Score = 30.3 bits (65), Expect = 6.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 482 KTTDTTPXNGKAYSFYWWRSSTQKQPIL 565
KTT + S WWR TQK+P+L
Sbjct: 46 KTTAKESSRRRTASISWWRRRTQKRPVL 73
>Z83840-2|CAB46206.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>S38729-1|AAB22381.1| 609|Homo sapiens Ku autoantigen p70 subunit
protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>M32865-1|AAA36155.1| 609|Homo sapiens protein ( Human Ku protein
subunit mRNA, complete cds. ).
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>J04611-1|AAA51733.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>J04607-1|AAA61177.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>CR542219-1|CAG47015.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>BC072449-1|AAH72449.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>BC018259-1|AAH18259.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>BC012154-1|AAH12154.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>BC010034-1|AAH10034.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>BC008343-1|AAH08343.1| 609|Homo sapiens XRCC6 protein protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
>AY870329-1|AAW34364.1| 609|Homo sapiens thyroid autoantigen 70kDa
(Ku antigen) protein.
Length = 609
Score = 29.9 bits (64), Expect = 8.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 KPL*RTKPNFWIYLYLFLNNPYNMVVGAFPIAKLSVLLVKQISKPIANVCKERAKNN--P 182
KPL K + ++ LF+ ++V+G+ + S LL+K + K +A +C+ + N P
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTL--FSALLIKCLEKEVAALCRYTPRRNIPP 408
Query: 183 FF 188
+F
Sbjct: 409 YF 410
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,108,224
Number of Sequences: 237096
Number of extensions: 2081377
Number of successful extensions: 3914
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3909
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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