Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L02
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine re...    28   6.5  
AF068721-3|AAC19261.1|  101|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical
           protein H43I07.1 protein.
          Length = 266

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 44/79 (55%)
 Frame = +3

Query: 114 VLLVKQISKPIANVCKERAKNNPFFRTYVCMPPAQFYNWCEVKAKMWILNLGKPVNIPVL 293
           ++  +Q+SKPIA+      K++P FR  + +P  +       + +M  L LG+P++   +
Sbjct: 1   MIAARQVSKPIADAVLRYGKDHPVFRNKLLLPIGRGLVRFTSRLRMKRLGLGEPISQAPI 60

Query: 294 SQEMAIELGANLLGETVIF 350
           S+  A+E  ++ + + V+F
Sbjct: 61  SESAALEQASDFVQQLVLF 79


>AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein266 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 93  FPIAKLSVLLVKQISKPIANVCKERAKNNPFFRTY---VCMPPAQFYNWCEVKAKMWILN 263
           FP+A + ++   +++  +A +     KN     TY     M   +F     ++A ++ LN
Sbjct: 185 FPVATVVLIYAAELNVVVA-LLSRNMKNTMKMATYSKQTAMMQKKFIQAMYIQAAVFFLN 243

Query: 264 LGKPVNIPVLSQ 299
           L  P+   VLSQ
Sbjct: 244 LQLPILYTVLSQ 255


>AF068721-3|AAC19261.1|  101|Caenorhabditis elegans Hypothetical
           protein ZK1055.3 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 242 FNFTPIVKLRWRHTNISSEKWIILGSLLAHV 150
           FN  P  K  W+ T +   K+++ GSL  HV
Sbjct: 41  FNVIPGNKTVWKKTEVLRRKFVLNGSLSFHV 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,405
Number of Sequences: 27780
Number of extensions: 309708
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)