Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K23
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   1.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.0  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   5.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.1  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   9.1  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   9.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   9.1  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 262 IAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFACN 393
           + +F  F+S      F  +N+   N+F   +  P LR S  ACN
Sbjct: 20  VPSFPPFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACN 63


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 277  DFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEF 384
            DF   +L  AF++   +    FLAY  + FL+   F
Sbjct: 1141 DFMQSQLIPAFLVTTDTKAQGFLAYALQEFLKLGGF 1176


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 274 GDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFACNFSDIV 408
           G F+    T   V   S +V     Y ++PF+R      NFS IV
Sbjct: 30  GSFSKKSSTSQLVRTGSPSVEPTALYLQQPFVRTHLVKGNFSTIV 74


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 340 FLAYDKEPFLRPSEFACNFSDI 405
           FLAYD+ P L   E   +F D+
Sbjct: 338 FLAYDRSPSLTNQEAESSFQDV 359


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 526 TSPKVYSHCEILKYCLHFEWSIVYPCKHL 440
           T  +V   C ILKY ++F  +  + CK+L
Sbjct: 17  TFQEVQHPCSILKYKVYFVTTDTFYCKYL 45


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
 Frame = -2

Query: 356 LSYARKTLTVELFLITKASVNSSELKSPNAAIIPSEYFPNELXVIS--------LTKELV 201
           LS   KTL   L L      N +  K  +  +      P+E+ ++         LT    
Sbjct: 451 LSEDSKTLVRNLVLALSLCHNVTPSKGHDGVVSYQAASPDEVAIVKWTSTLGLVLTNRTR 510

Query: 200 DKITLNNKIKIVYTIF 153
           D ITLNN +  +  IF
Sbjct: 511 DAITLNNNVYKILNIF 526


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 456 YTIDHSK--CKQYFKISQCEYTLGEVCPH*IVLML 554
           Y++DH+   CKQY  + +  Y LG +  +   LML
Sbjct: 642 YSLDHAAQICKQYNYLDELVYILGRMGNNKEALML 676


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 241 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFACNFSD 402
           G  S+ + A    F  +++ D    +NS +++V     +E +L P + AC +S+
Sbjct: 135 GLQSKNVQACIKHFVCNDMEDE---RNSVSIDVSQRALREVYLMPFQLACKYSN 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,739
Number of Sequences: 5004
Number of extensions: 49844
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)