Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K15
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    77   9e-16
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   6.8  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   6.8  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    24   6.8  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   6.8  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    24   6.8  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    24   9.0  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   9.0  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 77.0 bits (181), Expect = 9e-16
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = +1

Query: 172 YGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKXRKGQMIQF 342
           +GGQ+KP+F         +VLRLEC  CK ++Q+ LKRCKHFELGG+K  KG  IQF
Sbjct: 50  FGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106



 Score = 35.1 bits (77), Expect = 0.004
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 27  MVNVPKQRRTYXXXXXXXXXXXXSQLQKVQGKGT-LPXAXRRYDRKQQGLRWSVQTHLQK 203
           MVN+PK R+TY               Q  +G  + L    RRYDRKQ G     +    K
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 204 EGK 212
           + K
Sbjct: 61  KAK 63


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 70  VNATKYTRYHSYKKSKAKARCPXLXDVMIVNSRAYGG 180
           VN    TR  S  KSK    CP    +MI NS    G
Sbjct: 606 VNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAG 642


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 276 CNL*SHLAIST--LKTEHNFLSGFCLLFEDGFGLTTV 172
           C+   HL  S    K E   L G CL   DG+ LT++
Sbjct: 443 CSTAPHLTCSADAQKKECQALGGTCLYKRDGYYLTSI 479


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 91  LCTLWHLHFLQYVLRCFGTFTIFE 20
           L TL+H   + + + C G F +F+
Sbjct: 75  LLTLFHFPIIGFFVECLGFFNLFK 98


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 VVSPNPSSKRRQKPLRKLCSVLS 244
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 74  MPQSTQGITATKSPRQRHAAQXXKTL*S*TAGLTVVSPNPSSK 202
           +PQ ++  T+  S   R AA+   T       LT V+ NPS++
Sbjct: 40  LPQLSRSATSNFSTSARFAARYPTTAGESFQNLTPVNSNPSNQ 82


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = -3

Query: 189 FGLTTVSPAVYDHNVX*XWAACLCLGLFVAVIPCVLCGIY 70
           + +T + PA+ ++ +   ++     G++  + PC+L  +Y
Sbjct: 339 YAVTRILPAIQNNIIFLEYSRTSKQGMWSILSPCILIAVY 378


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 281 FNATCDLTLQSAHSRRSTIFLVVFAFFL 198
           +N +C LTL     R   +FL+ F++ L
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLIDFSYLL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,419
Number of Sequences: 5004
Number of extensions: 24328
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)