Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_K15
(374 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 78 2e-15
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 78 2e-15
AC084197-30|AAK68595.1| 303|Caenorhabditis elegans Exosome (mul... 31 0.20
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 2.5
AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical... 27 3.3
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 26 7.6
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 26 7.6
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 77.8 bits (183), Expect = 2e-15
Identities = 43/97 (44%), Positives = 57/97 (58%)
Frame = +1
Query: 52 GRTAKNVNATKYTRYHSYKKSKAKARCPXLXDVMIVNSRAYGGQSKPIFXXXXXXXXXIV 231
G+ K+ N K T+Y K+SK A+ D +GGQ+KPIF IV
Sbjct: 14 GKCRKHTNH-KVTQYKKGKESKF-AQGRRRYDR---KQSGFGGQTKPIFRKKAKTTKKIV 68
Query: 232 LRLECADCKVRSQVALKRCKHFELGGDKXRKGQMIQF 342
LR+EC +CK + Q+ +KRCKHFELGG K +GQ+IQF
Sbjct: 69 LRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 34.3 bits (75), Expect = 0.029
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +3
Query: 27 MVNVPKQRRTYXXXXXXXXXXXXSQLQKVQGKGTLPXAXRRYDRKQQGLRWSVQTHLQKE 206
MVNVPK RRT+ K + RRYDRKQ G + +K+
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 207 GK 212
K
Sbjct: 61 AK 62
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 77.8 bits (183), Expect = 2e-15
Identities = 43/97 (44%), Positives = 57/97 (58%)
Frame = +1
Query: 52 GRTAKNVNATKYTRYHSYKKSKAKARCPXLXDVMIVNSRAYGGQSKPIFXXXXXXXXXIV 231
G+ K+ N K T+Y K+SK A+ D +GGQ+KPIF IV
Sbjct: 14 GKCRKHTNH-KVTQYKKGKESKF-AQGRRRYDR---KQSGFGGQTKPIFRKKAKTTKKIV 68
Query: 232 LRLECADCKVRSQVALKRCKHFELGGDKXRKGQMIQF 342
LR+EC +CK + Q+ +KRCKHFELGG K +GQ+IQF
Sbjct: 69 LRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 34.3 bits (75), Expect = 0.029
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +3
Query: 27 MVNVPKQRRTYXXXXXXXXXXXXSQLQKVQGKGTLPXAXRRYDRKQQGLRWSVQTHLQKE 206
MVNVPK RRT+ K + RRYDRKQ G + +K+
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 207 GK 212
K
Sbjct: 61 AK 62
>AC084197-30|AAK68595.1| 303|Caenorhabditis elegans Exosome
(multiexonuclease complex)component protein 2 protein.
Length = 303
Score = 31.5 bits (68), Expect = 0.20
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 96 SQLQKVQGKGTLPXAXR--RYDRKQQGLRWSVQTHLQKEGKNH 218
+++Q+VQ GTL R +Y + QQG+ V HL K+ K H
Sbjct: 149 AEVQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKH 191
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 2.5
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 11 PNELKNGERTKTAQDVLQK---M*MPQSTQGITATKSPRQRHA 130
PN ++NG T TAQ +K + PQ++ GI A +PR R A
Sbjct: 333 PNVVRNGAPT-TAQQAPRKPIGIARPQTSSGIAAPGAPRSRIA 374
>AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical
protein Y39G10AR.5 protein.
Length = 917
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 46 SAGRTAKNVNATKYTRYHSYKKSKAKARCPXLXDVMIVNSRAY 174
+A + A+++N +YTR + + K R L ++++N +AY
Sbjct: 229 TAAQIARHINDGRYTRTNILEGMDTKFRDTILSKLLLLNPKAY 271
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 313 CHHQAQSACISSMQPVISPCNQHTQ 239
C Q QS C+ QPV S C Q
Sbjct: 137 CQQQCQSTCVQQQQPV-SQCQPQCQ 160
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 313 CHHQAQSACISSMQPVISPCNQHTQ 239
C Q QS C+ QPV S C Q
Sbjct: 137 CQQQCQSTCVQQQQPV-SQCQPQCQ 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,039,787
Number of Sequences: 27780
Number of extensions: 148611
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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