Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K14
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   102   4e-23
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   3.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   9.5  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  102 bits (244), Expect = 4e-23
 Identities = 50/76 (65%), Positives = 55/76 (72%)
 Frame = +2

Query: 284 IMKAMGXXXXXXXXXXXXIXKAVAMRKHLERNRKDKDSKFXLILXESRIHRLARYYKTKS 463
           I+KA G            I KAV++RKHLERNRKDKDSKF LIL ESRIHRLARYY+   
Sbjct: 74  ILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVG 133

Query: 464 VLPPNWKYESSTASAL 511
            LPP WKYES+TASAL
Sbjct: 134 ALPPTWKYESATASAL 149



 Score = 91.5 bits (217), Expect = 7e-20
 Identities = 42/65 (64%), Positives = 49/65 (75%)
 Frame = +1

Query: 103 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 282
           SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG+KI+R
Sbjct: 14  SALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMR 73

Query: 283 YHEGN 297
             + N
Sbjct: 74  ILKAN 78


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 362 KHLERNRKDKDSKFXLILXESRIHRLARYYKTKS 463
           K+  R +K+ D ++  +L ESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 338 IXKAVAMRKHLERNRKDKDSKFXLILXESRI-HRLARYYKTKSVLPPNWKYESS 496
           + K +   K+ E + K + + F      S   H  +   +TKS LPPN    SS
Sbjct: 95  VAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSALPPNVPASSS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,916
Number of Sequences: 5004
Number of extensions: 33521
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)