Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K13
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    82   2e-17
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    82   2e-17
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    24   7.8  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    24   7.8  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    24   7.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   7.8  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 82.2 bits (194), Expect = 2e-17
 Identities = 36/47 (76%), Positives = 40/47 (85%)
 Frame = +1

Query: 160 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLXKCGVISPRF 300
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+ KCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 27.1 bits (57), Expect = 0.83
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 96  NLYITAXKRGKRQVLIRP 149
           N  + A +RG+RQVLIRP
Sbjct: 12  NNIVNAERRGRRQVLIRP 29



 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 299 FDVPIXDIERWTN-LLPS 349
           F+V + DIE+W N LLPS
Sbjct: 79  FNVKLKDIEKWVNQLLPS 96


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 82.2 bits (194), Expect = 2e-17
 Identities = 36/47 (76%), Positives = 40/47 (85%)
 Frame = +1

Query: 160 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLXKCGVISPRF 300
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+ KCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 27.1 bits (57), Expect = 0.83
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 96  NLYITAXKRGKRQVLIRP 149
           N  + A +RG+RQVLIRP
Sbjct: 12  NNIVNAERRGRRQVLIRP 29



 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 299 FDVPIXDIERWTN-LLPS 349
           F+V + DIE+W N LLPS
Sbjct: 79  FNVKLKDIEKWVNQLLPS 96


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 202 IGEFEIVDDHRAGKIVVNLTGR 267
           IGE  I+ D+RA  I++ + GR
Sbjct: 535 IGELRILVDYRAQSIILPIFGR 556


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 279 WCXFTSFLMFPSXILKD 329
           WC F SF   P  I+KD
Sbjct: 135 WCLFPSFKETPHWIVKD 151


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 272 TSVVXFHLVFDVPIXDIERWTNLLP 346
           T+++  + V      DI+RW N+LP
Sbjct: 390 TALLFVYYVMRTKHSDIQRWQNVLP 414


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 260 QADXTSVVXFHLVFDVPIXDIERWTNL 340
           Q + T V  F L+  +P+ D + W +L
Sbjct: 224 QINRTDVDLFLLIGHIPVRDYDEWKSL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,508
Number of Sequences: 5004
Number of extensions: 16473
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)