Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_K13
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 87 3e-18
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 87 3e-18
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 51 2e-07
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 35 0.015
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 27 4.0
07_01_0802 - 6287180-6287605 27 5.3
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 26 7.1
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 87.4 bits (207), Expect = 3e-18
Identities = 39/47 (82%), Positives = 41/47 (87%)
Frame = +1
Query: 160 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLXKCGVISPRF 300
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRL KCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 62 MVRMNVLSDALKSIHNC*XAREKTSXHQALXPKSS 166
MVR++VL+DALK+++N EK Q L SS
Sbjct: 1 MVRVSVLNDALKTMYNA----EKRGKRQVLIRPSS 31
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 111 AXKRGKRQVLIRP 149
A KRGKRQVLIRP
Sbjct: 17 AEKRGKRQVLIRP 29
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 87.4 bits (207), Expect = 3e-18
Identities = 39/47 (82%), Positives = 41/47 (87%)
Frame = +1
Query: 160 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLXKCGVISPRF 300
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRL KCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 62 MVRMNVLSDALKSIHNC*XAREKTSXHQALXPKSS 166
MVR++VL+DALK+++N EK Q + SS
Sbjct: 1 MVRVSVLNDALKTMYNA----EKRGKRQVMIRPSS 31
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 111 AXKRGKRQVLIRP 149
A KRGKRQV+IRP
Sbjct: 17 AEKRGKRQVMIRP 29
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1
Query: 160 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLXKCGVISPR 297
V+V FL +M GYI +FE++D HR GKI V L GR+ C ++ R
Sbjct: 32 VMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYR 77
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 35.1 bits (77), Expect = 0.015
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 220 VDDHRAGKIVVNLTGRLXKCGVISPR 297
VDDH++G+I++ GRL K GVIS R
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFR 937
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 305 HQKRGEXTPHLXSLPVRFTTILPAL*SSTISNSP 204
H RG P + P + PA+ ++T SNSP
Sbjct: 794 HMVRGAAPPPASTAPPAANNVTPAINATTASNSP 827
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +3
Query: 231 QSWQDCCKSHRQTXQVWC 284
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 103 YRF*GVTQYVHTHHG*DLA 47
+RF GVT ++THHG +A
Sbjct: 470 FRFDGVTSMMYTHHGLQVA 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,237,964
Number of Sequences: 37544
Number of extensions: 99990
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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