Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K13
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...    90   5e-19
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    27   2.8  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score = 89.8 bits (213), Expect = 5e-19
 Identities = 42/46 (91%), Positives = 43/46 (93%)
 Frame = +1

Query: 160 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLXKCGVISPR 297
           VIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRL K  VISPR
Sbjct: 33  VIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPR 78



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 62  MVRMNVLSDALKSIHNC*XAREKTSXHQALXPKSS 166
           MVRMNVL+DAL +I+N     EK    Q L   +S
Sbjct: 1   MVRMNVLADALNAINNA----EKRGKRQVLIRPAS 31


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 305 HQKRGEXTPHLXSLPVRFTTILPAL*SSTISNSPM 201
           H  +G+       LP RF+T+L AL   T+ NS M
Sbjct: 318 HPSKGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,314,406
Number of Sequences: 27780
Number of extensions: 88877
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)