Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    30   0.25 
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   4.1  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   7.2  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   7.2  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   7.2  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   7.2  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    25   9.5  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   9.5  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 26/83 (31%), Positives = 36/83 (43%)
 Frame = +3

Query: 6   VWHVFITRHTPRXWFCLLIKILYPNISMXSLIIVLFVFALAVYKLLRRKTVRWVKTNKYG 185
           V HVF+T         L +   Y  I++ S II     AL         T+ W K NKYG
Sbjct: 397 VTHVFVTIFAV-CMGALAVLFNYIGITI-SWIITFIGIALGPAVFGITLTLFWKKMNKYG 454

Query: 186 GVETAILRTAPGPVCWPIIGSLH 254
            +    + +  G VCW  +GS +
Sbjct: 455 MIIGCPMGSITGVVCW--VGSCY 475


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 117 FALAVYKLLRRKTVRWVKTNKYGGVET 197
           FALA Y L  R T+R ++T++ G + T
Sbjct: 185 FALAFYNLPFRSTIRDLRTDRIGRLTT 211


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 15  VFITRHTPRXWFCLLIKILYPNISMXSLIIVLFVF 119
           VFIT  T   W  L   + Y N  +   I V+FVF
Sbjct: 251 VFITMDTSDIWLALSKCLNYVNTVIVYPIFVIFVF 285


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 209 DRTGARLLAHYRESTPSGRP 268
           D   AR +AH +ESTP  +P
Sbjct: 235 DEKIARFIAHLKESTPDKKP 254


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 375 IREVLNQNGNVVAGRPD-FLRFHKLFAGDRNN 467
           +RE+ +Q   + AGRPD  LRF    +G +N+
Sbjct: 70  LRELFDQRRLLEAGRPDGVLRFRPKKSGPKND 101


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 177 KYGGVETAILRTAPGPVCWPIIGSLHLLGGHE 272
           KY GV    L    G   WP+   + L+GGHE
Sbjct: 41  KYTGVCHTDLHALQGD--WPLPAKMPLIGGHE 70


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
          methyltransferase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 45 WFCLLIKILYPNISMXSL 98
          W C  +K+LYP IS   L
Sbjct: 37 WICKELKLLYPEISKHGL 54


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 234 PIIGSLHLLGGHESPFQAFTELSXKYGDIFS 326
           P +GS    G    P+  F E   KYGD+F+
Sbjct: 41  PFVGSAVAYG--MDPYVFFRECRAKYGDVFT 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,090
Number of Sequences: 5004
Number of extensions: 46542
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)