Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K08
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    45   1e-05
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   0.95 
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   5.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.1  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.1  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.7  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   6.7  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   8.8  

>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +3

Query: 516 PLXPWDEXYLKEHNIKHMSFHSYLPKITS 602
           PL P+DE Y +E+ IKH+SFH+YL KI S
Sbjct: 155 PLEPYDESYRQENKIKHLSFHAYLRKINS 183



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +1

Query: 25  MLLRVQSPEGTARVEVLDSDVTAHLFXRIYEALNLNSFA---FTLHKDRQRKEEITSSKS 195
           M+LR +S  G AR E   +D  A L  +I   +  N ++    +L ++   +  I S+ +
Sbjct: 1   MILRFRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQNESDQGVIFSNLN 60

Query: 196 RQ-LRDCGLCHGDMIYL 243
            Q L+D GL HG M+YL
Sbjct: 61  DQTLQDAGLTHGQMLYL 77


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 285 CGRLFKEYSTIDWIQVYHVAMTQSTISQL 199
           CGR+F+ YS++D   +    + Q  ++Q+
Sbjct: 741 CGRVFRRYSSLDCTSIVEYVIKQFKVNQM 769


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 429 LQMYFXFLWSTRRWGGYW 376
           +++++ F+W    WGG+W
Sbjct: 99  VRIFWIFVWLEVAWGGFW 116


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 133 SFAFTLHKDRQRKEEITSSKSRQLRDCGLCHGDMIYLNPVNGAVLFEQSSTSS 291
           +F   +HK    K + +SSKS      GL     I LNP +       SS++S
Sbjct: 313 TFVEAIHKILDTKSKHSSSKSSHDSSQGLESTSSIALNPTSSISSTSSSSSTS 365


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 222 TQSTISQLSRFAGCDFFLALSVLVQSECERVQIQSF 115
           + S IS  SR     F+ A+S  V S C  +Q+QSF
Sbjct: 425 SDSLISWASRLFTKGFWYAISFGVFSNCFSLQLQSF 460


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 112 YEALNLNSFAFTLHKDRQRKEEITSSKSRQLRDCGL-CHGDMIYLNPV 252
           Y  +  + F FT  KD   K+EIT    + LR   L  H D   + P+
Sbjct: 598 YYPIESSEFGFTNLKDVTSKDEITDGFDKALRSNSLRTHRDSRPVQPL 645


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 543 LKEHNIKHMSFHSYLPKITSKNF 611
           L+ HN   M+FH Y P I +KN+
Sbjct: 211 LESHN---MTFHDYEPSIENKNY 230


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 88  TAHLFXRIYEALNLNSFAFTLHKDRQRKEEITSSKSRQLRDCGL 219
           + HL  ++ +   + +FA     D    + IT      LR+CGL
Sbjct: 116 SVHLHTKLIDGRPITNFASFNFLDLAENKHITECAVATLRECGL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,898
Number of Sequences: 5004
Number of extensions: 43852
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)