Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K01
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   144   7e-36
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   144   7e-36
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    28   1.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   3.7  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   8.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.6  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  144 bits (350), Expect = 7e-36
 Identities = 79/175 (45%), Positives = 102/175 (58%), Gaps = 4/175 (2%)
 Frame = +1

Query: 43  LREYEVIGRKLPSENEPKPPLL*NENFLSGXQLSPNLAFWYFLRQLKKFKKTTGEIVXXX 222
           L+EY+V+GRK+P+E+EP P L     F     ++ +  +WYFL+ + K KK TGEIV   
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKS-RYWYFLKMINKVKKATGEIVAIN 61

Query: 223 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGARHRARAHSIQ 402
                       FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+
Sbjct: 62  EISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIR 121

Query: 403 IIK-VEVIXAAACRRPQVKQFHNSTIRFPLPKR---VHHYXRLNTFAYXRPXTYF 555
           I+K VEV      RR  VKQ  N  ++FPLP R   V        FA  RP T++
Sbjct: 122 ILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  144 bits (350), Expect = 7e-36
 Identities = 79/175 (45%), Positives = 102/175 (58%), Gaps = 4/175 (2%)
 Frame = +1

Query: 43  LREYEVIGRKLPSENEPKPPLL*NENFLSGXQLSPNLAFWYFLRQLKKFKKTTGEIVXXX 222
           L+EY+V+GRK+P+E+EP P L     F     ++ +  +WYFL+ + K KK TGEIV   
Sbjct: 3   LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKS-RYWYFLKMINKVKKATGEIVAIN 61

Query: 223 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGARHRARAHSIQ 402
                       FGIW+RY+SRSG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+
Sbjct: 62  EISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIR 121

Query: 403 IIK-VEVIXAAACRRPQVKQFHNSTIRFPLPKR---VHHYXRLNTFAYXRPXTYF 555
           I+K VEV      RR  VKQ  N  ++FPLP R   V        FA  RP T++
Sbjct: 122 ILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 367 PYLYSTE*QLHLHSGHGIHGTCCVHPNETHSVARYQSS*S*WGFSLEF 224
           P L S+    +LHSG   HG    HP+   S+    S  S    SL+F
Sbjct: 125 PSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLPSRSSTGSGSLDF 172


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +3

Query: 306 VP*IP*PECRWSCHSVLXRYGS*TQSPSSLNTDHQSGSNQXCCVSPSTGQTVPQQHHQIP 485
           +P  P P    +  +VL ++       SS +      SNQ   +SPST  +    HH   
Sbjct: 68  LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127

Query: 486 IAQTCAPLQXT 518
            +   +P   T
Sbjct: 128 SSYAVSPTSPT 138


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 486 WESDGAVVELFDLWTATRSSXDY 418
           WE  G  V+ +  W A   S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 125 SPXSNCRQISLSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRTLVSGYAMSL 286
           SP  + R   +   S D+ + SRRP +  S  RKF  K    PS  ++L  G   SL
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,613
Number of Sequences: 5004
Number of extensions: 44551
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)