Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_K01
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   171   2e-43
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical ...    28   4.5  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  171 bits (417), Expect = 2e-43
 Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 1/177 (0%)
 Frame = +1

Query: 28  KAKGQ-LREYEVIGRKLPSENEPKPPLL*NENFLSGXQLSPNLAFWYFLRQLKKFKKTTG 204
           KA G+ L EY V+GRK+P+E EP  P+   + F +   ++ +  FWYF+  L++ KK  G
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKS-RFWYFVSMLRRVKKANG 62

Query: 205 EIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYXDMGARHRA 384
           EI+              N+G+WL+Y+SR+G HNMYREYRD +V GAVTQCY DMGARHRA
Sbjct: 63  EILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRA 122

Query: 385 RAHSIQIIKVEVIXAAACRRPQVKQFHNSTIRFPLPKRVHHYXRLNTFAYXRPXTYF 555
           +A  I I+KV+ + A   +R  +K FH++ IRFPLP RV     L+ F   R  T+F
Sbjct: 123 QADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 324 PECRWSCHSVLXRYGS*TQSPS-SLNTDHQSGSNQXCCVSPSTGQT--VPQQHHQIPIAQ 494
           P+C  SCHS     G+   S S S NT+     +  C   P   Q   +  Q  QI I Q
Sbjct: 213 PKCTQSCHSQCISQGNPAASCSNSCNTE----CSDKCSTRPVQAQVQQIQPQQVQITIPQ 268

Query: 495 TC 500
           TC
Sbjct: 269 TC 270


>AC006804-2|AAL32253.2|  372|Caenorhabditis elegans Hypothetical
           protein Y53G8B.3 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 254 LILMGLF-SGISLIE-TISPVVFLNFLSCLRKYQKARFGDNWXPERKF 117
           +IL  ++ +G  L++ T++PVV + F   LR    ++  + W P +KF
Sbjct: 282 MILYDVYHNGTRLVKLTLAPVVLVAFAQLLRYGFNSKISNAWKPTQKF 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,165
Number of Sequences: 27780
Number of extensions: 253935
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)