Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J24
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   157   4e-40
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   157   4e-40
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   1.3  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   1.3  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    23   8.8  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    23   8.8  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    23   8.8  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  157 bits (381), Expect = 4e-40
 Identities = 73/93 (78%), Positives = 80/93 (86%)
 Frame = +2

Query: 14  LGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMXVKADRDEASPYAAML 193
           +GPQ   G  VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGM VK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 194 AAQDVAXKCKTLGITALHIKLRATGGNKTKTPG 292
           AAQD A KCK +GITALHIK+RATGG  TKTPG
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPG 97


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  157 bits (381), Expect = 4e-40
 Identities = 73/93 (78%), Positives = 80/93 (86%)
 Frame = +2

Query: 14  LGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMXVKADRDEASPYAAML 193
           +GPQ   G  VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGM VK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 194 AAQDVAXKCKTLGITALHIKLRATGGNKTKTPG 292
           AAQD A KCK +GITALHIK+RATGG  TKTPG
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPG 97


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 236  TALHIKLRATGGNKTKTPGSWCSVC 310
            T +  +LRATGG + KT G    VC
Sbjct: 1361 TIMRRQLRATGGYEVKTEGDAFMVC 1385


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 45  CLV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*X*RLTVMKRHPTLLCWR 197
           CLV  T S++ + +  ++          VSLV    +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 75  SMTHSFMLLIYPAGKLSPVSL 137
           SMT+ + L++YP  K+S  +L
Sbjct: 474 SMTNGYPLIMYPHSKMSGFTL 494


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 172 VTLRCYVGGTGCSXEMQNSWHNGLAHKAPCYWWKQNK 282
           V  R  +GGT  S   ++S     A +  CY W  NK
Sbjct: 325 VPSRLTLGGTSLSWSWRHSGRIVSACQEYCYVWNFNK 361


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 8   VTLGPQHLVGXTVFGVAHIFASFNDTFVH 94
           V  G  HLVG  VFG +    SF     H
Sbjct: 76  VISGASHLVGTRVFGTSGSELSFTKDGTH 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,039
Number of Sequences: 5004
Number of extensions: 22912
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)