Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_J24
(328 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 168 1e-42
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 168 1e-42
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 168 1e-42
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 58 1e-09
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 29 1.1
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 1.5
06_03_0265 - 18923597-18924367,18924459-18924704 27 2.6
06_03_0263 - 18910447-18911217,18911311-18911556 27 2.6
05_03_0656 - 16676406-16676654 27 2.6
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 3.5
09_04_0520 + 18286435-18287279,18287818-18288697 27 4.6
08_02_1092 + 24267737-24268641,24269005-24269884 27 4.6
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 27 4.6
06_03_0264 - 18916879-18916920,18917871-18918563 26 8.0
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549... 26 8.0
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 168 bits (408), Expect = 1e-42
Identities = 79/95 (83%), Positives = 85/95 (89%)
Frame = +2
Query: 8 VTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMXVKADRDEASPYAA 187
VTLGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM VKADRDE+SPYAA
Sbjct: 37 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 96
Query: 188 MLAAQDVAXKCKTLGITALHIKLRATGGNKTKTPG 292
MLA+QDVA +CK LGITALHIKLRATGGNKTKTPG
Sbjct: 97 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPG 131
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 168 bits (408), Expect = 1e-42
Identities = 79/95 (83%), Positives = 85/95 (89%)
Frame = +2
Query: 8 VTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMXVKADRDEASPYAA 187
VTLGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM VKADRDE+SPYAA
Sbjct: 15 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 74
Query: 188 MLAAQDVAXKCKTLGITALHIKLRATGGNKTKTPG 292
MLA+QDVA +CK LGITALHIKLRATGGNKTKTPG
Sbjct: 75 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPG 109
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 168 bits (408), Expect = 1e-42
Identities = 79/95 (83%), Positives = 85/95 (89%)
Frame = +2
Query: 8 VTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMXVKADRDEASPYAA 187
VTLGP G VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM VKADRDE+SPYAA
Sbjct: 14 VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 73
Query: 188 MLAAQDVAXKCKTLGITALHIKLRATGGNKTKTPG 292
MLA+QDVA +CK LGITALHIKLRATGGNKTKTPG
Sbjct: 74 MLASQDVAQRCKELGITALHIKLRATGGNKTKTPG 108
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 58.4 bits (135), Expect = 1e-09
Identities = 36/63 (57%), Positives = 39/63 (61%), Gaps = 9/63 (14%)
Frame = +2
Query: 131 VTGGMXVKADRDEASPYAAMLAAQDVAXKCK------TLGITALH---IKLRATGGNKTK 283
V GGM +KAD DE+SPYAAML +QDVA CK LG L I L A GGNKT
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCKYRTNGQILGDCFLEFCLIMLCAAGGNKTN 270
Query: 284 TPG 292
TPG
Sbjct: 271 TPG 273
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 131 VTGGMXVKADRDEASPYAAMLAAQDVA 211
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 20 PQHLVGXTVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMXV 151
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 251 LCARPLCQEFCISXLHPV 198
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 106 IRPGNYRPCHWWHEXEG*P**SVTLRCYVGGT 201
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>06_03_0263 - 18910447-18911217,18911311-18911556
Length = 338
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 106 IRPGNYRPCHWWHEXEG*P**SVTLRCYVGGT 201
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPTE------VRLKCSVANT 336
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 193 GGTGCSXEMQNSWHNGLAHKAPCYWWKQNKD 285
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 56 AHIFASFNDTFVHVTDLSGRETIARVT 136
+H+++ D V++TDLS RE++ T
Sbjct: 280 SHVYSGGRDQSVYLTDLSNRESVLLCT 306
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 60 CATPNTVXPTKCWGPR 13
C P+ V PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 60 CATPNTVXPTKCWGPR 13
C P+ V PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 84 HSFMLLIYPAGKLSPVSLVA*X*RLTVMKRHPT 182
H+F + A +L P L A +LT++++HP+
Sbjct: 1691 HAFCQFVTGAPRLPPGGLAALNPKLTIVRKHPS 1723
>06_03_0264 - 18916879-18916920,18917871-18918563
Length = 244
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 106 IRPGNYRPCHWWHEXE 153
++ GN RP HWW E
Sbjct: 216 VKMGNIRPKHWWTPAE 231
>01_07_0327 +
42752697-42752711,42753937-42754127,42754822-42754919,
42755792-42755880
Length = 130
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 247 VQGRYAKSFAFLCYILCRQHSS 182
++G+Y S+ CY C HS+
Sbjct: 62 MEGQYVASWLIACYCTCSHHST 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,814,976
Number of Sequences: 37544
Number of extensions: 183251
Number of successful extensions: 399
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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