Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J24
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   165   7e-42
Z82055-5|CAB04847.1|  229|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    26   5.6  
Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  165 bits (401), Expect = 7e-42
 Identities = 77/95 (81%), Positives = 84/95 (88%)
 Frame = +2

Query: 8   VTLGPQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMXVKADRDEASPYAA 187
           V+LGPQ   G  +FGVAHIFASFNDTFVH+TD+SGRETI RVTGGM VKADRDE+SPYAA
Sbjct: 16  VSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAA 75

Query: 188 MLAAQDVAXKCKTLGITALHIKLRATGGNKTKTPG 292
           MLAAQDVA +CK LGI ALHIKLRATGG +TKTPG
Sbjct: 76  MLAAQDVADRCKQLGINALHIKLRATGGTRTKTPG 110


>Z82055-5|CAB04847.1|  229|Caenorhabditis elegans Hypothetical
           protein T26H2.5 protein.
          Length = 229

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 188 MLAAQDVAXKCKTLGITALHIKLRATGGNKTKTPG 292
           M A  D+  +C+   +   H  LR + G +T+ PG
Sbjct: 162 MCADFDICERCEAKSVHLQHAMLRISTGLRTEIPG 196


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 177 GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVXPTKC 25
           G AS RSA  +  P + + V +    V+  +VS   +++   P+TV    C
Sbjct: 528 GHASRRSARNYSAPPSASYVRKKISLVSVDSVSFGASRLSFQPSTVFLLGC 578


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 177 GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVXPTKC 25
           G AS RSA  +  P + + V +    V+  +VS   +++   P+TV    C
Sbjct: 528 GHASRRSARNYSAPPSASYVRKKISLVSVDSVSFGASRLSFQPSTVFLLGC 578


>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 147 FMPPVTRAIVSRPDKSV 97
           F+PPVT+ ++S PD +V
Sbjct: 413 FLPPVTQIVLSSPDLAV 429


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 20  PQHLVGXTVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 145
           P H  G T FG  H   + +   + +TDL  R TIA VT G+
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGL 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,983,401
Number of Sequences: 27780
Number of extensions: 146044
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)