Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J19
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.5  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   8.6  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 209  IS*TPVSKIKSYISDHNANSNPMLFKFYRSILLAFLE*LFPHFLLISIKG 60
            IS   +S +   I+++N N   +LFK +  +L A  + +F     +S+KG
Sbjct: 1219 ISPLMLSTLDMIIAENNVNEVSVLFKSFLELLAADEDLIFEADQKLSLKG 1268


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 419 TTSHGSAIQSEXEPDTANEYHSNHS 493
           +TS+ +   S  EPD++N +H+N S
Sbjct: 85  STSNSNEPISFNEPDSSNSHHNNES 109


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 357 LEPSSDVSERFIMTPQVCGLCCSST 283
           ++PS+  S++FI   + C LC  ST
Sbjct: 427 IDPSNQPSDQFIPLLKTCALCNLST 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,357
Number of Sequences: 5004
Number of extensions: 41225
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)