Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J19
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591     28   5.0  
09_02_0555 - 10588685-10592038                                         28   5.0  
03_05_0186 + 21731294-21732277                                         28   5.0  
08_02_0235 + 14627648-14628889                                         27   8.7  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    27   8.7  
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346...    27   8.7  
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898           27   8.7  

>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
          Length = 573

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 265 KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIG 122
           + + +ELG+  LNF   T YH     +++ + QI   IL LC L+F G
Sbjct: 340 QKLQEELGTR-LNFS--TAYHPQTDGQTERVNQILEDILRLCALDFGG 384


>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 265 KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNF 128
           K + +ELG+  LNF   T YH     +++ ++QI   +L  C L+F
Sbjct: 834 KKLQEELGTR-LNFS--TAYHPQTDGQTERLYQILEDMLRACVLDF 876


>03_05_0186 + 21731294-21732277
          Length = 327

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 265 KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIG 122
           K +L+E+ S  LNF   T+YH     +++ + QI   +L  C L+F G
Sbjct: 130 KKLLEEMASK-LNFS--TSYHPQTDGQTERVNQILEDMLRACVLDFDG 174


>08_02_0235 + 14627648-14628889
          Length = 413

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 265 KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNFIG 122
           K + +E+GS  LNF   T YH     +++ + QI   +L  C L+F G
Sbjct: 130 KKLQEEMGSK-LNFS--TAYHPQTDGQTERVNQILEDMLRACVLDFGG 174


>08_02_0167 - 13564466-13566227,13566361-13566644,13566684-13567540,
            13567684-13567957,13567973-13568218
          Length = 1140

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 265  KSILKELGSLYLNFMSFTTYHKHRSVKSKVIFQITTQILTLCYLNF 128
            K + +ELG+  LNF   TTYH     +++ + Q+   +L  C L+F
Sbjct: 884  KKLQEELGTR-LNFS--TTYHPQADGQTERLNQVLEDMLRACVLDF 926


>04_04_0027 +
           22232781-22233051,22234256-22234329,22234471-22234638,
           22234812-22234971,22235062-22235145,22235781-22236078,
           22236158-22236364,22236465-22236735,22236971-22237055,
           22237141-22237182,22237302-22237350,22237825-22237894,
           22238314-22238463,22238592-22238619,22238856-22238990,
           22240693-22241469,22242133-22242192,22242367-22242413
          Length = 991

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 407 GASSTTSHGSAIQSEXEPDTANEYHSNHSTKRXKTEIXNSTD 532
           GA   T     I ++ E DTA E       K+ KT+  N ++
Sbjct: 410 GAHQNTDKTKHIHTDAEEDTAQEASKKKKNKKKKTQEKNESE 451


>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
          Length = 247

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 363 KKAXNXRSAR-EAIHMVHLQLHHMDLQYNQXMNLIQQ 470
           KKA   R AR + +H   LQ      QY   +NL+QQ
Sbjct: 114 KKARPSRRARAQLLHQYQLQQQQQHRQYLHSLNLLQQ 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,548
Number of Sequences: 37544
Number of extensions: 220642
Number of successful extensions: 418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)