Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J17
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     123   2e-30
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         106   2e-25
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      36   4e-04
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  123 bits (296), Expect = 2e-30
 Identities = 55/116 (47%), Positives = 78/116 (67%)
 Frame = +3

Query: 150 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVXVTLAAEGRLLQAHKLXLSVCSPYFQEM 329
           M   + F L WNN+ +++++ F  L    D V VTLA +GR L+AH++ LS CSPYF+E+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 330 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQXEVNVKQEELXSFISTAEQLQVKGLT 497
            K  P +HP++ L+DV+ S L  L++F+Y  EVNV Q  L SF+ TAE L+V GLT
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  106 bits (254), Expect = 2e-25
 Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
 Frame = +3

Query: 162 EQFSLCWNNFHANMSAGFHGLLSRGDLVXVTLAAEGRLLQAHKLXLSVCSPYFQEMFKMN 341
           + + L WNN+ +NM++ FH LL     V VTLA     L+AHK+ LS CS YFQ++   N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 342 PTQHP-IVFLKDVSHSALRDLLQFMYQXEVNVKQEELXSFISTAEQLQVKGL 494
           P +HP I+  +DV  + L+ +++F+Y+ E++V Q EL S + TA+QL++KGL
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 35.5 bits (78), Expect = 4e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 150 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVXVTLAAE 266
           M   + F L WNN+ +++++ F  L    D V VTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 127 FHVESSLSWRRTNNFHY 177
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -3

Query: 580 CLCCDDL-GPG 551
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,615
Number of Sequences: 438
Number of extensions: 3126
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)