Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_J15
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 182 3e-46
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 170 8e-43
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 163 9e-41
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 48 6e-06
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 1.6
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 6.5
08_02_0650 - 19708479-19710507,19711033-19711889 28 6.5
06_03_0265 - 18923597-18924367,18924459-18924704 28 6.5
09_04_0520 + 18286435-18287279,18287818-18288697 27 8.5
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 8.5
08_02_1092 + 24267737-24268641,24269005-24269884 27 8.5
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 8.5
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 27 8.5
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 27 8.5
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 182 bits (442), Expect = 3e-46
Identities = 92/137 (67%), Positives = 102/137 (74%)
Frame = +1
Query: 97 RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 276
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 277 ADRDEASPYAAMLAAQDVXEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 456
ADRDE+SPYAAMLA+QDV ++CK LGITALHIKLRA AQ
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 145
Query: 457 MKIGRIEDVTPVPSDST 507
MKIGRIEDVTPVP+DST
Sbjct: 146 MKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 170 bits (413), Expect = 8e-43
Identities = 92/151 (60%), Positives = 102/151 (67%), Gaps = 11/151 (7%)
Frame = +1
Query: 88 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 267
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 268 KVKADRDEASPYAAMLAAQDVXEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 447
KVKADRDE+SPYAAMLA+QDV ++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
Query: 448 XXXMKIGRI-----------EDVTPVPSDST 507
MKIGRI EDVTPVP+DST
Sbjct: 121 RSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 163 bits (396), Expect = 9e-41
Identities = 84/129 (65%), Positives = 93/129 (72%)
Frame = +1
Query: 88 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 267
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 268 KVKADRDEASPYAAMLAAQDVXEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 447
KVKADRDE+SPYAAMLA+QDV ++CK LGITALHIKLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119
Query: 448 XXXMKIGRI 474
MKIGRI
Sbjct: 120 RSGMKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 253 VTGGMKVKADRDEASPYAAMLAAQDVXEKCK 345
V GGMK+KAD DE+SPYAAML +QDV CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 253 VTGGMKVKADRDEASPYAAMLAAQDV 330
V GGM +K+D DE SP+ + + D+
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDI 191
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 360 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 470
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 142 PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 273
P HL G F +A F ++N+T ++ D R T+A TGG V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528
>08_02_0650 - 19708479-19710507,19711033-19711889
Length = 961
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 459 EDWPH*RCHPRTIRLDPXEGWPKRTQAVIC 548
ED +C P +RLD G+PK T V C
Sbjct: 805 EDLQVLKCLPALLRLDLYPGYPKHTLKVSC 834
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 228 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 323
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPAE------VRLKCSVANT 336
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 182 CATPNTVSPTKCWGPR 135
C P+ V+PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 345 NSWHNGLAHKAPCYWWKQNKDPWSWC 422
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 182 CATPNTVSPTKCWGPR 135
C P+ V+PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 299 GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPT 153
G SSR+ F+ PP R S P V + +S A + P VSPT
Sbjct: 860 GPDSSRNIFSAFPPAVRENQSIPSAPVAQSWISFG-ASSESKPTIVSPT 907
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 106 CFFSGPWLSL*LESCQNLKEIWLKD 32
C +G WLSL L+ Q L+E+ L+D
Sbjct: 1241 CGITGKWLSLMLQHVQALQELSLED 1265
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 462 DWPH*RCHPRTIRLDPXEGWPKRTQAVIC 548
D PH RC+ R +RLDP P + C
Sbjct: 10 DLPHVRCYTRHLRLDPMLFMPANGPNLSC 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,604
Number of Sequences: 37544
Number of extensions: 342183
Number of successful extensions: 767
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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