Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J11
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   2.3  
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    26   4.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.5  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   9.5  

>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 368 DYVKWLEDGDFQDIDFKFPHESVKITLQDESIKNKV 475
           D++ W  D    D D  FP    +I   +E + NK+
Sbjct: 125 DFILWTGDNSRHDNDNHFPRTQSEILASNEDLVNKM 160


>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 YSHEIRKDVRLENLKSLKLEDAWPFIRDEIXI 205
           +S  +RK VRL N KS++    W +I +++ +
Sbjct: 42  FSMHLRKHVRLPNYKSVQCRSPW-WIAEQVAV 72


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 237 RTSLKLIYTKSRLCSCQTRKRLTVKTSRLSE 329
           RT L  +  +   CS QT+ R ++KT +L E
Sbjct: 499 RTILLHLADQMNACSLQTKSRESIKTLKLIE 529


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 605 HQ*SYKRTSSPSDXHYFQHPNK 540
           H+ SYKR+ SPS  ++   P+K
Sbjct: 266 HKSSYKRSLSPSTRYHQDRPDK 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,783
Number of Sequences: 5004
Number of extensions: 42043
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)