Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J11
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    28   6.6  

>Z81496-6|CAB04070.2|  313|Caenorhabditis elegans Hypothetical
           protein F09C6.2 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 398 FQDIDFKFPHESVKITLQDESIKNKVRVIMVNFSRCTI 511
           F  IDF F  E V I LQD+  K ++++   +F++ ++
Sbjct: 59  FDSIDFHFQDEHVTIVLQDDG-KRELQINAEHFTKSSL 95


>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -2

Query: 170 LQVSVTSSFPILHLYES 120
           +++S+T+S+P++HLY S
Sbjct: 256 IELSITTSYPVIHLYAS 272


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -2

Query: 170 LQVSVTSSFPILHLYES 120
           +++S+T+S+P++HLY S
Sbjct: 256 IELSITTSYPVIHLYAS 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,991
Number of Sequences: 27780
Number of extensions: 223467
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)