Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J10
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 536 PMSSHCRLMTSCLEFSDNGLGNS 468
           P  + C+++ S +   + GLGNS
Sbjct: 590 PXPNTCKVIASSVSAGEEGLGNS 612


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 487 TMV*AIRPHILHLFESSW 434
           T+V  + P +LHL +++W
Sbjct: 24  TVVDKVPPDMLHLIDANW 41


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 21  PKNERLS--VIPNFHHLLQPSKPVLCTNQRIINLLNYFIY 134
           P++E  S  VIP     +   K + C+  R IN+ N ++Y
Sbjct: 524 PRHEIRSTDVIPGTQEHVCGVKGIPCSWGRAINVANRYVY 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,387
Number of Sequences: 438
Number of extensions: 3682
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)