Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J05
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   118   5e-28
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   118   7e-28
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   2.8  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   3.7  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    26   3.7  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   6.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   6.4  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   8.4  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.4  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  118 bits (284), Expect = 5e-28
 Identities = 57/89 (64%), Positives = 68/89 (76%)
 Frame = +2

Query: 131 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYV 310
           L F TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQE ERER+D YV
Sbjct: 26  LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85

Query: 311 PXVSALEHDIIEVDPDTXDMLKMLDFNNI 397
           P VS LE D I VD DT DMLK L +++I
Sbjct: 86  PEVSELEKDKINVDQDTKDMLKALGYDSI 114



 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +1

Query: 67  RTKTVXXXXXXXXEKYYTRLTLDF 138
           RTKT         EKYY RLTLDF
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDF 28


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  118 bits (283), Expect = 7e-28
 Identities = 59/100 (59%), Positives = 73/100 (73%)
 Frame = +2

Query: 131 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYV 310
           L F TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQE ERER+D YV
Sbjct: 26  LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85

Query: 311 PXVSALEHDIIEVDPDTXDMLKMLDFNNINGLQLTQPATQ 430
           P VS LE D + VD DT DMLK L ++ I  +++  PA Q
Sbjct: 86  PEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124



 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +1

Query: 67  RTKTVXXXXXXXXEKYYTRLTLDF 138
           RTKT         EKYY RLTLDF
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDF 28


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 210 PAILFLRGLVGMIAISSHILLFVSKVK 130
           P I  LRGLV   A   H+L F++K++
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNKLE 483


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 409 LQAINIVEVQHLQHIXGVGVYFDDVMFESRHXWDIVVTPLTLLFL-KFDR-DSSHL 248
           L+  NI+E +++  +    +YF+  M  + + W I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 117 YKINT*LLIQIKEYVKKSLSFLPSLLGIKLLD 212
           YK+N   +I++K+ + KSL F   + G+KL+D
Sbjct: 10  YKLNH-TMIRVKD-LDKSLKFYTEVFGMKLID 39


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 191 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEXERERRDNYVPXVSALEHDIIEV 349
           +R +IA F    A H ++R   S+    ++ + E   +R   Y+P +S    + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 66  GHDPWLKLYSAAFDK 22
           G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 164 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 256
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
 Frame = +2

Query: 152 RICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYVPXVSALE 331
           R C+EI     +PL  K++     +  R RH Q  G + K +   ++ +       SAL 
Sbjct: 26  RSCDEIQ---NRPLGEKLSKI---VKARTRHYQNVGNAYKAEALLKDAKKQCETLKSALN 79

Query: 332 HDIIEVDPDTXDMLKMLDFNNINGLQ----LTQPATQ 430
             + EV+ ++  + K   + N  G Q    +T+P T+
Sbjct: 80  GKLPEVNIESHMLSKYRKYLNEGGKQGDVGITKPHTK 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,657
Number of Sequences: 5004
Number of extensions: 31756
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)