Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J05
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            111   2e-25
10_07_0174 + 13815478-13815903                                        109   9e-25
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    31   0.39 
06_01_0889 - 6807449-6809257                                           29   2.1  
03_02_0943 + 12598616-12598789,12599790-12601250                       28   3.7  
12_02_0594 - 20883859-20884200,20884250-20884528,20884931-208851...    27   6.4  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  111 bits (268), Expect = 2e-25
 Identities = 55/97 (56%), Positives = 73/97 (75%)
 Frame = +2

Query: 131 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYV 310
           L F TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQE ERERR ++V
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMDFV 85

Query: 311 PXVSALEHDIIEVDPDTXDMLKMLDFNNINGLQLTQP 421
           P  SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 86  PDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121



 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 67  RTKTVXXXXXXXXEKYYTRLTLDF 138
           RTKTV        EKYY+R+TLDF
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDF 28


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  109 bits (263), Expect = 9e-25
 Identities = 52/96 (54%), Positives = 71/96 (73%)
 Frame = +2

Query: 131 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYV 310
           L F TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQE ERERR ++V
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFV 85

Query: 311 PXVSALEHDIIEVDPDTXDMLKMLDFNNINGLQLTQ 418
           P  SALE + I VD +T +ML  L   ++ G++  Q
Sbjct: 86  PEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121



 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 67  RTKTVXXXXXXXXEKYYTRLTLDF 138
           RTKTV        EKYY+R+TLDF
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDF 28


>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 459 INYACHHSQPWVA---GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADT 316
           IN+   HS  W     GC +      +K+ +F+I LVS   S+++C  A T
Sbjct: 132 INWLKSHSASWTVADFGCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 236 LRHSQVRGI-SIKLQEXERERRDNYVPXVSALEHDIIEVDPD 358
           LRH Q R I ++ +    R R + YVP      HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 206 AGFATHLMRRLRHSQVRGISIKLQEXERERRDNYVPXVSALEHDIIEVDPDTXDMLKMLD 385
           A +++HL+RR+        + K Q  E ++  +     + LEHD+I  + +T D+LK L+
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96


>12_02_0594 -
           20883859-20884200,20884250-20884528,20884931-20885106,
           20885254-20885725
          Length = 422

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 87  SGEDYY*KILYKINT*LLIQIKEYVKKSLSFLPSLLGIKLLD 212
           S EDYY  ++Y +   L +++ +   +S + L  LLG+  LD
Sbjct: 377 SNEDYYQSVIYAVIDLLRVELNDRFSESSTVL--LLGVACLD 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,828,106
Number of Sequences: 37544
Number of extensions: 188114
Number of successful extensions: 451
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)