Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_J05
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 114 3e-26
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 30 1.1
AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of ... 29 1.9
AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of ... 29 1.9
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical ... 28 3.3
AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical ... 28 3.3
AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of ... 28 4.4
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 27 5.8
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 27 7.6
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 114 bits (275), Expect = 3e-26
Identities = 55/88 (62%), Positives = 66/88 (75%), Gaps = 3/88 (3%)
Frame = +2
Query: 137 FDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDNYVPX 316
F NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQE ERERRDNY+P
Sbjct: 28 FHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPE 87
Query: 317 VSALEHD---IIEVDPDTXDMLKMLDFN 391
+S ++ I+VD DT DMLK FN
Sbjct: 88 ISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 67 RTKTVXXXXXXXXEKYYTRLTLDF 138
RTKTV EKYYTR+T DF
Sbjct: 5 RTKTVKKASRVLIEKYYTRMTNDF 28
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 186 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRXRSVRGVTTMSXKCL 323
SL GI++ L G S+T RKCEE L +F V+G+T + C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684
>AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform b protein.
Length = 218
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 165 SSHILLFVSKVKC*SCIVFFNNNLRRFLDGFSPGHDPWLKLYS 37
S HI+ S KC SCI +FN++ R L F H K +S
Sbjct: 38 SEHIIRGSSPAKCKSCIKWFNSS-HRLLLHFHTAHLDHTKFFS 79
>AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform a protein.
Length = 262
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 165 SSHILLFVSKVKC*SCIVFFNNNLRRFLDGFSPGHDPWLKLYS 37
S HI+ S KC SCI +FN++ R L F H K +S
Sbjct: 82 SEHIIRGSSPAKCKSCIKWFNSS-HRLLLHFHTAHLDHTKFFS 123
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 359 TXDMLKMLDFNNINGLQLTQPATQGWLWW 445
T D+ KML+ NN+NGL+L G+L W
Sbjct: 107 TDDIGKMLNVNNLNGLELI--LLSGFLQW 133
>AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical
protein F25G6.7a protein.
Length = 527
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 210 PAILFLRGLVGMIAISSHILLFVSKVKC*SCI 115
P+I +L G +G++ I S+I L K SCI
Sbjct: 230 PSIFYLSGFIGVLFIFSYIFLGADKPSKQSCI 261
>AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical
protein F25G6.7b protein.
Length = 513
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 210 PAILFLRGLVGMIAISSHILLFVSKVKC*SCI 115
P+I +L G +G++ I S+I L K SCI
Sbjct: 216 PSIFYLSGFIGVLFIFSYIFLGADKPSKQSCI 247
>AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform c protein.
Length = 175
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 165 SSHILLFVSKVKC*SCIVFFNNNLRRFLDGFSPGHDPWLKLYS 37
S HI+ S KC SCI +FN++ R L F H L+S
Sbjct: 38 SEHIIRGSSPAKCKSCIKWFNSS-HRLLLHFHTAHLDHTPLHS 79
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 208 WICHTFNEASQTLASARNLYQTSGXGA 288
W CH FN A ++ A+ L Q A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 204 LLDLPHI**GVSDTRKCEESLSNFRXRSVRGVTTMSXKCLLSNMTSS 344
+L L H+ TRKCEE L +F + ++ ++ K L N+ S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,454,621
Number of Sequences: 27780
Number of extensions: 173567
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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