Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_J04
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 78 1e-15
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 35 0.012
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.44
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 3.1
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 5.5
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 5.5
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.5
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 7.2
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.2
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 25 7.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.5
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 25 9.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.5
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 78.2 bits (184), Expect = 1e-15
Identities = 46/115 (40%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Frame = +1
Query: 328 VVQFTVKHEQDIDCGGGYLKVFDCKLEXKDMHGXTPYXIMFGPDICGPGTKKVHVIFSYK 507
VVQ+ V E+ ++CGG YLK+ + +M Y IMFGPD CG + VH IF +K
Sbjct: 119 VVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGVNDR-VHFIFKHK 176
Query: 508 G-------KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXAD 651
+ HL + T+LYTLIVKPD T+EV I+ + V G L D
Sbjct: 177 NPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFYD 231
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 34.7 bits (76), Expect = 0.012
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = -2
Query: 274 NLASSEVFKPLSSXGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 98
N SSE F S+ SL P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 97 DNASKLTTTSTTAFIFDSQYHLRSN 23
+ S L+T STT +S L+++
Sbjct: 532 NAKSSLSTPSTTIPTSNSSVSLQTS 556
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.5 bits (63), Expect = 0.44
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = -2
Query: 205 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDSQY 38
N N F + + S +SGNFS T Q DN S +T ST F S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPSDR 634
Query: 37 HLRSNK 20
L SN+
Sbjct: 635 DLLSNQ 640
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 126 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPXDDKGLKTSEDA 269
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 499 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES 633
S + K H KK +D Y+H+Y + P + + + ++ ES
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPES 181
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 143 IIRKLLLKEYITIYRR*CQQADNDQYNSFHFRFTVPPSF 27
II+ LLL+ Y T +R + + D S H V P F
Sbjct: 243 IIQMLLLRAYATKFRTRIRGVNTDLCRSIHVSTLVTPLF 281
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 123 EEKFPDDSWESNWVYS 170
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 298 LNLRERA*NLASSEV----FKPLSSXGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESS 137
++LR RA L+ E+ + LS+ LK +++ FP SFP +Y + ++SS
Sbjct: 121 VDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSS 178
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 168 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 76
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 274 NLASSEVFKPLSSXGSLKNFPAVNLNFPNSFP 179
N +E F+P SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = -2
Query: 268 ASSEVFKPLSSXGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 89
+SS LSS S + + + ++F S ++ SH SS + SS ++ + ++
Sbjct: 395 SSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASS 454
Query: 88 SKLTTTSTTAF 56
S L T+S+ +
Sbjct: 455 SSLLTSSSHTY 465
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 517 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 630
H I + + +++ + HL TL KPD+ ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Frame = -1
Query: 473 PGPQMSGPNIXSYGVXPCMSXCSSLQSKTLRYPPPQSMS--------CSCLTVNWTTQGF 318
P +++ P + S+ P + C+SL S PP S+S C+ V W
Sbjct: 243 PSTRITIPEVFSH---PFLMGCTSLSSMDSTTPPTPSLSIDEIDPLVVDCMCVLWKKSSS 299
Query: 317 TLITERFELTGESIEPRIFR 258
+ R + ++ E +++
Sbjct: 300 KKVVRRLQQRDDNDEKYVYK 319
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 150 PTNHQETS---PQRIHHNLSKIMPAS*QRPVQQLSFSIHSTTF 31
PT H T+ P H N + +P + + + ++ ++TTF
Sbjct: 136 PTTHVNTTTVVPPTTHANTTSFVPTTTESSIHPITTGFYNTTF 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,577
Number of Sequences: 5004
Number of extensions: 56268
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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