Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J04
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   154   5e-38
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   154   5e-38
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    82   3e-16
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    31   0.94 
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    31   0.94 
Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical p...    29   3.8  
U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  154 bits (374), Expect = 5e-38
 Identities = 68/108 (62%), Positives = 81/108 (75%)
 Frame = +1

Query: 328 VVQFTVKHEQDIDCGGGYLKVFDCKLEXKDMHGXTPYXIMFGPDICGPGTKKVHVIFSYK 507
           V+Q+TVKHEQ IDCGGGY+KV     +  D HG TPY +MFGPDICGP T++VHVI +YK
Sbjct: 88  VIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNYK 146

Query: 508 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXAD 651
           G+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G L  D
Sbjct: 147 GENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEED 194



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/76 (51%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +3

Query: 102 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPXDDKGLKTSEDARFYA 281
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 282 LSRKF-KPFSNEGKPL 326
            + KF K FSN+GK L
Sbjct: 72  RAAKFDKDFSNKGKTL 87


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  154 bits (374), Expect = 5e-38
 Identities = 68/108 (62%), Positives = 81/108 (75%)
 Frame = +1

Query: 328 VVQFTVKHEQDIDCGGGYLKVFDCKLEXKDMHGXTPYXIMFGPDICGPGTKKVHVIFSYK 507
           V+Q+TVKHEQ IDCGGGY+KV     +  D HG TPY +MFGPDICGP T++VHVI +YK
Sbjct: 88  VIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILNYK 146

Query: 508 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXAD 651
           G+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G L  D
Sbjct: 147 GENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEED 194



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/76 (51%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +3

Query: 102 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPXDDKGLKTSEDARFYA 281
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 282 LSRKF-KPFSNEGKPL 326
            + KF K FSN+GK L
Sbjct: 72  RAAKFDKDFSNKGKTL 87


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 12/123 (9%)
 Frame = +1

Query: 319 NPWVVQFTVKHEQDIDCGGGYLKVFD--CKLEXKDMHGXTPYXIMFGPDICGPGTKKVHV 492
           N +VVQ+ +K E+  +CGGGYLK+     + +  +    T Y IMFGPD CG  T KVH+
Sbjct: 136 NTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-ATGKVHL 194

Query: 493 IFSYKGKNHLIKKDIRCK----------DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDL 642
           IF YK   +    +              DD  THL+TL+VKP   Y V +D + +  G++
Sbjct: 195 IFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNM 254

Query: 643 XAD 651
            +D
Sbjct: 255 MSD 257


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 511   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 648
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++    A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 511   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVESGDLXA 648
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++    A
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDNSTALA 12900


>Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical
           protein R07B7.6 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 627 NFLIVNEDFIGVVRFHNQSVQMCVDIIFAADIF-FDEMVLTLVTEDYVYLLGSRTTNVRA 451
           N +IV++ F+  + F   ++ + + +    D +  DEM++  + E+Y+ L G   +N   
Sbjct: 318 NEVIVSKVFVKSM-FEKLNMDIIIKLFDDNDYYGVDEMLVQTLYENYLGLEGQMESNCTR 376

Query: 450 EHNXIWSLSVH 418
            HN I +   H
Sbjct: 377 NHNDILTRMTH 387


>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 558 VDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNXIW 433
           +D+I A+D+FFD      + + +  LL      ++ EH  IW
Sbjct: 111 LDVIIASDVFFDPSTFCPLIDTFAQLL------IKFEHATIW 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,107
Number of Sequences: 27780
Number of extensions: 333821
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)