Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J01
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   1.3  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   4.1  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   9.5  

>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 426 EALDKLHHGEAVTPLGRXVYADLDRPLXRYP 518
           EA + L+H E VT   +  +   DRP+  YP
Sbjct: 86  EATEALYHAEQVTEERKKHFEHHDRPIGSYP 116


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 374 SRSSTYGGTXNVRATFRRSARQAAPRRGSDAARTXSIC 487
           S+ + YG       T  ++ ++A     SD +RT  IC
Sbjct: 491 SKENYYGNAFTTERTVPKTVKEAICDYNSDTSRTWDIC 528


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
 Frame = +3

Query: 144 TTFYDEQYPLSGPVENLKRPLTLDVGRGGKRSRIAAPVLSSPDLQMLKLGSPELEKLIIQ 323
           T   ++  P+ GP+  +  P   D     K + IAA ++S  +  +L L  P+L     +
Sbjct: 174 TNMANQPCPVPGPISAVISPEISDKESLEKATDIAAELISKKEKPIL-LAGPKLRAAGAE 232

Query: 324 NGMVXXXXXXXXXXVLFPAVAP--TEEQXMYA 413
           +  V           + PA     +EE   YA
Sbjct: 233 SAFVKLAEALNCAAFIMPAAKGFYSEEHKNYA 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,495
Number of Sequences: 5004
Number of extensions: 44431
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)