Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_J01
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0988 + 26642247-26642506,26642790-26642872,26643150-266432... 33 0.14
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 29 1.8
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 1.8
06_02_0239 + 13384451-13387124,13387234-13387631 29 3.1
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 28 4.1
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134... 28 4.1
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198... 28 4.1
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 28 5.4
08_02_0196 - 14125037-14125175,14125525-14125604,14125938-141264... 27 7.2
10_01_0130 + 1540412-1541173 27 9.5
06_01_0466 + 3313174-3313305,3313404-3313483,3313582-3313726,331... 27 9.5
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 27 9.5
>06_03_0988 +
26642247-26642506,26642790-26642872,26643150-26643238,
26643478-26643551,26643783-26643833,26644512-26644588,
26644694-26645313
Length = 417
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 320 SERYGDNRYPYSGSACLISRSSTYGGTXNVRATFRRSARQAAP 448
S Y N PY+ +A + S S+ YGG+ T+ S AP
Sbjct: 365 SNSYSGNNIPYAAAAAMTSGSALYGGSTGSNGTWVASNTSTAP 407
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Frame = +3
Query: 102 RCKHMVRNSGHSMETTFYDEQYP--------LSGPVEN---LKRPLTLDVGRGGKRSRIA 248
+ KH SGH ++ F + P LS P N LK+ +TL + R + +A
Sbjct: 381 KIKHFKEESGHIIQEYFLSDDVPELIISLQELSAPEYNPIFLKKLITLAMDRKNREKEMA 440
Query: 249 APVLSSPDLQM 281
+ +LSS L++
Sbjct: 441 SALLSSLSLEL 451
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 115 WFGIPATAWRPPSMTSNILSAALWKTLKGP*PWMLG-GVGNVHESLHPFSPRQIYK 279
WF ++ W PSM N+L + + P +LG +H L PFS ++Y+
Sbjct: 1806 WFERDSSLWMLPSMNDNLLDHLKGRGV-STIPALLGLSREELHRLLQPFSASELYQ 1860
>06_02_0239 + 13384451-13387124,13387234-13387631
Length = 1023
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 171 LSGPVENLKRPLTLDVGRGGKRSRIAAPVLSSPDLQMLKLGSPELEKLIIQNGM 332
+ G + NLK TLD+ I A ++ L++L L +L+ L+ NG+
Sbjct: 562 IPGTIGNLKGLQTLDLSSNQLSGIIPATLVKMQALRLLNLSMNDLDGLVPNNGI 615
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 149 GGLHAVAGIPNHVFAPNASVSLNSL 75
GGLH + G+P+H+ A S+ SL
Sbjct: 80 GGLHHMLGLPDHILIAAAGDSIESL 104
>04_03_0572 +
17310729-17310746,17312209-17312902,17312991-17313400,
17325755-17326063
Length = 476
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 147 TFYDEQYPLS--GPVENLKRPLTLDVGRGGKRSRIAAPV 257
T Y PL P + RPL D+G GGKR + P+
Sbjct: 378 TSYCRNQPLRLLSPPPHPSRPLQPDLGEGGKRKGVGKPL 416
>01_01_0238 -
1976645-1977561,1977649-1977909,1978243-1978275,
1980556-1981345
Length = 666
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 268 GEERTGAAIRERFPPRPTSKVRGLLRFSTGPLRGYCSS*KVVS 140
G GA I +++ P S VRG + P+RGY K VS
Sbjct: 155 GNRTMGAYISDKWNSTPPSGVRGNCNSVSVPVRGYYDGMKPVS 197
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 111 HMVRNSGHSMETTFYDEQYPLSGPVENLKRPLTL-----DVGRGG 230
++V N+ E T D+Q PLSGP + R + D+G+GG
Sbjct: 135 NIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGG 179
>08_02_0196 -
14125037-14125175,14125525-14125604,14125938-14126463,
14126809-14126852,14127444-14127584,14127696-14128463
Length = 565
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 189 FPQGR*EDIARHRRWSPCCGRNS 121
F QGR D++RH R+ P G N+
Sbjct: 308 FLQGRGNDMSRHERFGPLAGINN 330
>10_01_0130 + 1540412-1541173
Length = 253
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 398 TXNVRATFRRSARQAAPRRGSDAARTXSICRFGQAAXAIP 517
T N R+T+RR R+ +P + + + C F A A P
Sbjct: 194 TENYRSTYRRGRRRPSPAAAAASKMYFAFCPFCVAKAAQP 233
>06_01_0466 +
3313174-3313305,3313404-3313483,3313582-3313726,
3313820-3314245
Length = 260
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 303 LEKLIIQNGMVXXXXXXXXXXVLFPAVAPTEEQXMYARPFVEALDK 440
L KL+ G+V V+ PA AP + Y R FV L+K
Sbjct: 189 LMKLVKVGGLVGYDNTLWNGSVVLPADAPMRKYIRYYRDFVLELNK 234
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 410 RATFRRSARQAAPRRGSDAARTXSICRFGQAAXAIPHSHR 529
RA RR RQ APRR A+ ++ R+G A A S R
Sbjct: 104 RARLRR--RQEAPRRAGGASTAAAVRRWGSARRAGRQSTR 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,739
Number of Sequences: 37544
Number of extensions: 340822
Number of successful extensions: 1006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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