Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_J01
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    30   1.2  
AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      28   3.7  
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 408 YARPFVEALDKLHHGEAVT 464
           Y RPF  AL++ HHGE +T
Sbjct: 314 YMRPFQNALERPHHGEFIT 332


>AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical
           protein Y32F6A.2 protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 19  ERHEGGRVLIVXKSYKRSRSEFSDTEAFGANTWFGIPATAWRPPSMTSNILSAALW 186
           E  E   +LI  + +++ +S F      G      I    W PPS+TS I +  LW
Sbjct: 228 ECDEYQEMLIATRGFQQRKSPFMSF-VHGLMYKRSITMNDWEPPSVTSIICAVCLW 282


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 PLSGPVENLKRPLTLDVGRGGKRSRI 245
           P  GPV+  K+P T+D GR   R+++
Sbjct: 34  PTKGPVQPQKKPTTVDNGRRAYRNQV 59


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 PLSGPVENLKRPLTLDVGRGGKRSRI 245
           P  GPV+  K+P T+D GR   R+++
Sbjct: 34  PTKGPVQPQKKPTTVDNGRRAYRNQV 59


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 125 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 259
           FRP   D    + +  +RPC       N GCW  W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 125 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 259
           FRP   D    + +  +RPC       N GCW  W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 125 FRPQHGDHLL*RAISSQRPCGKP*KAPNLGCWAGWETFTNRCTRS 259
           FRP   D    + +  +RPC       N GCW  W+ +++ C++S
Sbjct: 782 FRPCLTDQCSSKHLQEERPCD------NEGCWTNWDEWSS-CSQS 819


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 532 FTMGVGYRXSGLSKSAYTXRPSGVTASPW 446
           F  GVGY       S Y  R +G  ++PW
Sbjct: 56  FKDGVGYNLDSQQGSTYNLRKNGGPSNPW 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,686,589
Number of Sequences: 27780
Number of extensions: 259866
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)