Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I24
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   0.96 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   2.9  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   5.1  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    25   6.8  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   6.8  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   6.8  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    25   9.0  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 136 KSLPEFTKGIPELDVPSTDPVHLDDINIDGNGL 234
           + LP+ T+  P+L +P+ + V  D++ +D NG+
Sbjct: 27  EKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGI 59


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 175 DVPSTDPVHLDDINIDGNGLKLTFTKALM 261
           D+P++D V ++ IN   N L +   KALM
Sbjct: 468 DLPASDDVQIEFINFFLNNLSILTEKALM 496


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 168 RNTLRKLRQTLLYLFFDALFEVFIGEFAGFNVW 70
           +NTLRK  +  + +    +F   +G+F+  + W
Sbjct: 331 KNTLRKNNKDFVCVLMSEIFPSRLGQFSDIDAW 363


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 151 FTKG-IPELDVPSTDPVHLDDINIDGNGLKL 240
           F+KG  PE+ VP+    ++ D+ +DG  ++L
Sbjct: 26  FSKGTFPEVYVPTVFENYVADVEVDGRHIEL 56


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 7   SLYFYSRLTCSTQTPTNAXLPPYIEACEFSNENLEQCIKEQIE 135
           SL F S  +    TP +  LPP     EFS+E  E  ++E IE
Sbjct: 14  SLPFESENSSLGATPLS--LPPSSPPPEFSDEAAEALVEEDIE 54


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +1

Query: 73  YIEACEFSNENLEQCIK-EQIEKSLPEFTKGI-PELDVPSTDPVHLDDINIDGNGLKLTF 246
           YI   EF  E L+   + ++++ S+ E  K +  +L   +   +HL+  ++ G  L+LT 
Sbjct: 484 YIIRAEFDEELLDLRQRLDELQHSIFEEHKRVGSDLHQDTEKKLHLEQHHLYGWCLRLTR 543

Query: 247 TKALMHGLKGSHLKEFKLKFDG 312
           T+A     + SH  E   + +G
Sbjct: 544 TEAGCLRGRSSHYTELSTQKNG 565


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 151 FTKG-IPELDVPSTDPVHLDDINIDGNGLKL 240
           F+KG  PE+ VP+    ++ D+ +DG  ++L
Sbjct: 26  FSKGTFPEVYVPTVFENYVADVEVDGRHVEL 56


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = -1

Query: 242 VSFNPLPSMLMSSRCTGSVEGTSSSG-IPF--VNSGRLFSICSL-MHCSRFSLENSQASM 75
           + F   PS   S+      + T+ +G  PF  +   R      +   CSRF L++    +
Sbjct: 7   IGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKCKPI 66

Query: 74  YGG 66
           YGG
Sbjct: 67  YGG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,189
Number of Sequences: 5004
Number of extensions: 39152
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)