Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_I24
(518 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92973-8|CAO82049.1| 517|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81554-6|CAO82038.1| 517|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81516-6|CAB04206.1| 524|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z75535-5|CAA99829.1| 524|Caenorhabditis elegans Hypothetical pr... 27 6.1
U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical pr... 27 6.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 6.1
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 6.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 6.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 6.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 6.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 6.1
>Z92973-8|CAO82049.1| 517|Caenorhabditis elegans Hypothetical
protein Y6G8.8 protein.
Length = 517
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 202 LDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 324
+++++++G +L F + LM L +LK K+ F GDH N
Sbjct: 341 IENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379
>Z81554-6|CAO82038.1| 517|Caenorhabditis elegans Hypothetical
protein Y6G8.8 protein.
Length = 517
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 202 LDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 324
+++++++G +L F + LM L +LK K+ F GDH N
Sbjct: 341 IENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379
>Z81516-6|CAB04206.1| 524|Caenorhabditis elegans Hypothetical
protein F26H9.1 protein.
Length = 524
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 299 SLNSFR*LPFKPCINALVNVSFNPLPSMLMSSRCTGSVEG 180
S SF LP+ I+ L +N L M+M+S C G
Sbjct: 115 SYGSFGKLPYDAVIHILTRTPYNLLSRMVMTSSCWNQTIG 154
>Z75535-5|CAA99829.1| 524|Caenorhabditis elegans Hypothetical
protein F26H9.1 protein.
Length = 524
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 299 SLNSFR*LPFKPCINALVNVSFNPLPSMLMSSRCTGSVEG 180
S SF LP+ I+ L +N L M+M+S C G
Sbjct: 115 SYGSFGKLPYDAVIHILTRTPYNLLSRMVMTSSCWNQTIG 154
>U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical
protein C02G6.2 protein.
Length = 816
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 145 PEFTKGIPELDVPSTDPVHLDDINID 222
P+FTK E +V + D HL ++N D
Sbjct: 134 PQFTKSATEREVCAVDSEHLSNLNSD 159
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 139 SLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDH 318
SLP F KG+ + VP P+ L ++ I+G + + K G +K+ K++ D +
Sbjct: 4210 SLPSFKKGLADQSVPKGTPLVL-EVEIEGKPKDVKWYK------NGDEIKDGKVE-DLGN 4261
Query: 319 GNFKL 333
G ++L
Sbjct: 4262 GKYRL 4266
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 139 SLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDH 318
SLP F KG+ + VP P+ L ++ I+G + + K G +K+ K++ D +
Sbjct: 3570 SLPSFKKGLADQSVPKGTPLVL-EVEIEGKPKDVKWYK------NGDEIKDGKVE-DLGN 3621
Query: 319 GNFKL 333
G ++L
Sbjct: 3622 GKYRL 3626
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 139 SLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDH 318
SLP F KG+ + VP P+ L ++ I+G + + K G +K+ K++ D +
Sbjct: 4210 SLPSFKKGLADQSVPKGTPLVL-EVEIEGKPKDVKWYK------NGDEIKDGKVE-DLGN 4261
Query: 319 GNFKL 333
G ++L
Sbjct: 4262 GKYRL 4266
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 139 SLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDH 318
SLP F KG+ + VP P+ L ++ I+G + + K G +K+ K++ D +
Sbjct: 4210 SLPSFKKGLADQSVPKGTPLVL-EVEIEGKPKDVKWYK------NGDEIKDGKVE-DLGN 4261
Query: 319 GNFKL 333
G ++L
Sbjct: 4262 GKYRL 4266
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 139 SLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDH 318
SLP F KG+ + VP P+ L ++ I+G + + K G +K+ K++ D +
Sbjct: 3570 SLPSFKKGLADQSVPKGTPLVL-EVEIEGKPKDVKWYK------NGDEIKDGKVE-DLGN 3621
Query: 319 GNFKL 333
G ++L
Sbjct: 3622 GKYRL 3626
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +1
Query: 139 SLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDH 318
SLP F KG+ + VP P+ L ++ I+G + + K G +K+ K++ D +
Sbjct: 4210 SLPSFKKGLADQSVPKGTPLVL-EVEIEGKPKDVKWYK------NGDEIKDGKVE-DLGN 4261
Query: 319 GNFKL 333
G ++L
Sbjct: 4262 GKYRL 4266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.137 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,100
Number of Sequences: 27780
Number of extensions: 220802
Number of successful extensions: 607
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -