Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I24
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    39   4e-05
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 31/156 (19%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
 Frame = +1

Query: 64  LPPYIEACEFS--NENLEQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINI-DGNG- 231
           LP     C+ S   +   QCI E +  ++     G+    +   +P+ +D + I +  G 
Sbjct: 24  LPNNWRICDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGS 83

Query: 232 --LKLTFTKALMHGL-KGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEADGKLLILQI 402
             L+  +    ++GL K   +K + + +D    + + ++   +   A+Y+ +GK+L+L +
Sbjct: 84  VTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSE-SYNPQVDFVADYKIEGKVLLLPV 142

Query: 403 KXKGDALINCVNVDVEIXSKLN-QVXDNNGKDHLKL 507
           +  G +  N    D++  + +  +  + NG+ +L++
Sbjct: 143 RGAGKS--NITMYDLKSHNDIYCEKYEKNGETYLRI 176


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 198 HWVRRRNVQFRNTLRKLRQTL 136
           HW+ R NVQ    L K   TL
Sbjct: 798 HWILRSNVQQCEQLEKAPNTL 818


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 382 FRRLHIQLLSSCC 344
           FRR  +++L +CC
Sbjct: 397 FRRAFVRILCACC 409


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 216 HRRQRVETDIHQSIN 260
           H+++R   DIH  +N
Sbjct: 154 HKKRRARRDIHPELN 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,930
Number of Sequences: 438
Number of extensions: 2468
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)