Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_I18
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 73 3e-14
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 71 8e-14
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 30 0.13
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 1.6
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 2.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.6
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 6.6
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 6.6
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 8.7
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 24 8.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 8.7
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 72.5 bits (170), Expect = 3e-14
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +1
Query: 103 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQ 282
V+DK + +FDK ++ KEVP +K I+ +V+ +R+K+ GSL R A+ +L E+G+I++
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71
Query: 283 VVQHHGQVIYTRA 321
V QH Q IYTRA
Sbjct: 72 VDQHSKQAIYTRA 84
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 70.9 bits (166), Expect = 8e-14
Identities = 32/72 (44%), Positives = 50/72 (69%)
Frame = +1
Query: 103 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQ 282
V+DK + +FDK ++ KEVP +K I+ +V+ +R+K+ GSL R A+ +L E+G+I++
Sbjct: 12 VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71
Query: 283 VVQHHGQVIYTR 318
V QH Q IYTR
Sbjct: 72 VDQHSKQAIYTR 83
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 30.3 bits (65), Expect = 0.13
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 2 GRXGFGQTASKNTELSRKDPVAAKPRRRSGPKE 100
G+ G G+ N EL + DP+ PRR S K+
Sbjct: 272 GKNGSGELGLSNDELKKDDPIQITPRRISAFKD 304
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 151 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPA 47
+M YQ TP HE WT SS L H + P+
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPS 184
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 294 MLDYLFDETFFPKLDECXSR 235
M D LF E+F +LD C R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 158 SXSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 60
S Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/73 (20%), Positives = 28/73 (38%)
Frame = -2
Query: 290 WTTCLMRPFSLSSMSAXLXREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNTWLFNL 111
W+ L+ PFSL+S + + P + ++ Y G ++ Y
Sbjct: 313 WSILLL-PFSLTSYAKNGWKNPSMIAMMVVGGVILIAYSGYEMFIAPYPSCPRRVMNRTF 371
Query: 110 SRTFPLDHFFFLA 72
+D F++LA
Sbjct: 372 ITAVIIDFFYYLA 384
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 353 IVYATGSSPLVARV*ITCP*CWTTCLMRP 267
I+Y T ++P++ + +T CW L P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 137 SNNTWLFNLSRTFPLDHFFFLAL 69
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 205 SERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIY 312
+ERL + ++ R AL+EL++ LIKQ QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 8.7
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 257 SSMSAXLXREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT--WLFNLSRTFP 96
S+ S L EP+TF+ S T + IS SL LS++T L + S T P
Sbjct: 946 SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,805
Number of Sequences: 5004
Number of extensions: 27125
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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